Strain Fitness in Shewanella loihica PV-4 around Shew_3146

Experiment: Fumarate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fumarate (C)
3,739,459	+		Shew_3145	0.57	-2.2
3,739,495	+		Shew_3145	0.63	-1.2
3,739,495	+		Shew_3145	0.63	-0.0
3,739,503	-		Shew_3145	0.64	-1.3
3,739,578	+		Shew_3145	0.77	-1.3
3,739,580	+		Shew_3145	0.77	-0.7
3,739,586	-		Shew_3145	0.78	-2.1
3,739,587	-		Shew_3145	0.78	-0.3
3,739,589	+		Shew_3145	0.79	+0.6
3,739,597	-		Shew_3145	0.80	+0.4
3,739,599	+		Shew_3145	0.80	-1.8
3,739,599	+		Shew_3145	0.80	-0.9
3,739,599	+		Shew_3145	0.80	+0.8
3,739,599	+		Shew_3145	0.80	-0.1
3,739,607	-		Shew_3145	0.82	-2.5
3,739,607	-		Shew_3145	0.82	+0.4
3,739,612	+		Shew_3145	0.83	-1.5
3,739,612	+		Shew_3145	0.83	+0.5
3,739,620	-		Shew_3145	0.84	+0.2
3,739,620	-		Shew_3145	0.84	+0.5
3,739,620	-		Shew_3145	0.84	-0.1
3,739,630	-		Shew_3145	0.86	+0.4
3,739,733	-				+0.4
3,739,733	-				+0.5
3,739,752	+				+0.1
3,739,754	+				+0.4
3,739,754	+				-1.8
3,739,754	+				+1.1
3,739,755	-				-1.5
3,739,762	+				+0.6
3,739,762	+				+0.3
3,739,762	+				-0.3
3,739,770	-				-0.1
3,739,771	+				-0.9
3,739,888	+				-0.5
3,739,910	-				-0.1
3,739,929	+				-0.2
3,739,929	+				+0.4
3,739,929	+				-0.3
3,739,929	+				-2.3
3,739,929	+				-1.0
3,739,936	-				-0.1
3,739,936	-				-1.3
3,739,937	-				+0.7
3,739,937	-				+0.5
3,739,946	-				+0.1
3,739,967	+				+0.1
3,739,969	+				-1.4
3,739,974	+				-0.2
3,739,974	+				-0.0
3,739,974	+				+0.0
3,739,974	+				+0.3
3,739,974	+				-0.3
3,739,974	+				-2.2
3,739,982	-				+0.1
3,739,982	-				+0.6
3,739,982	-				-0.9
3,739,982	-				+0.4
3,739,982	-				-0.4
3,739,982	-				+0.3
3,739,982	-				+0.4
3,739,982	-				+1.7
3,739,982	-				+0.0
3,739,982	-				+0.1
3,739,982	-				+0.4
3,739,984	-				-1.2
3,740,018	-				+1.4
3,740,042	+				-0.2
3,740,071	-				-0.5
3,740,072	+				+0.8
3,740,072	+				+0.2
3,740,072	+				-2.2
3,740,080	-				+0.5
3,740,080	-				-1.1
3,740,098	+				+0.5
3,740,098	+				+1.0
3,740,106	-				-2.2
3,740,106	-				+0.9
3,740,107	+				+0.2
3,740,107	+				+0.0
3,740,107	+				+0.6
3,740,115	-				-0.6
3,740,124	+				+2.7
3,740,152	+				-3.0
3,740,165	-				-1.5
3,740,165	-				-0.0
3,740,167	+				+1.1
3,740,170	+				-0.8
3,740,170	+				-3.4
3,740,174	-				+0.6
3,740,174	-				-0.0
3,740,174	-				-2.2
3,740,174	-				-2.5
3,740,180	+				+0.8
3,740,180	+				+0.9
3,740,185	+				+0.0
3,740,185	+				-2.2
3,740,188	-				-0.6
3,740,188	-				-0.7
3,740,200	-				-0.4
3,740,206	+				-2.1
3,740,206	+				+0.5
3,740,213	+				-0.3
3,740,214	-				+0.0
3,740,222	-				-3.4
3,740,301	-				+0.2
3,740,307	+				+0.3
3,740,312	+				+0.6
3,740,312	+				-1.5
3,740,312	+				-0.1
3,740,312	+				-1.7
3,740,312	+				+0.5
3,740,312	+				-0.3
3,740,317	+				-0.1
3,740,317	+				-3.8
3,740,325	-				-1.3
3,740,325	-				+2.8
3,740,325	-				+0.1
3,740,325	-				+0.5
3,740,346	-				-3.3
3,740,398	+				+0.0
3,740,398	+				+0.0
3,740,398	+				+0.3
3,740,398	+				-2.2
3,740,398	+				+0.3
3,740,398	+				+0.7
3,740,398	+				+1.3
3,740,398	+				+0.0
3,740,398	+				-1.1
3,740,398	+				-0.0
3,740,398	+				-1.9
3,740,398	+				+0.6
3,740,398	+				+0.0
3,740,398	+				+1.2
3,740,398	+				-0.9
3,740,398	+				-0.7
3,740,398	+				+0.3
3,740,398	+				-0.7
3,740,398	+				-1.8
3,740,398	+				+0.7
3,740,398	+				-0.6
3,740,398	+				+0.1
3,740,398	+				-1.0
3,740,398	+				+0.6
3,740,398	+				-3.9
3,740,398	+				-2.6
3,740,398	+				-0.4
3,740,398	+				+0.1
3,740,398	+				+1.6
3,740,398	+				+1.2
3,740,398	+				+1.0
3,740,398	+				-0.6
3,740,404	+				+3.5
3,740,405	-				+0.1
3,740,406	-				-0.0
3,740,406	-				-0.1
3,740,406	-				-0.5
3,740,406	-				-2.9
3,740,406	-				+0.6
3,740,406	-				+1.0
3,740,406	-				+0.3
3,740,406	-				+0.2
3,740,406	-				+0.6
3,740,406	-				+1.3
3,740,406	-				+0.4
3,740,412	-				+0.9
3,740,412	+				+0.5
3,740,422	+				+1.1
3,740,422	+				+0.1
3,740,422	+				+0.3
3,740,422	+				-0.5
3,740,422	+				+0.4
3,740,430	-				+0.5
3,740,430	-				+0.6
3,740,430	-				-0.8
3,740,430	-				+0.2
3,740,430	-				+0.5
3,740,431	+				-3.3
3,740,440	-				+0.7
3,740,450	+				+0.0
3,740,458	-				+0.8
3,740,458	-				-0.3
3,740,462	+				-1.3
3,740,467	+				+0.7
3,740,467	+				+0.6
3,740,467	+				+1.2
3,740,469	+				-0.3
3,740,470	-				+0.2
3,740,475	-				+0.9
3,740,477	+				-1.7
3,740,477	+				+0.9
3,740,477	+				+1.7
3,740,477	+				+0.9
3,740,477	+				+0.7
3,740,477	+				+0.9
3,740,477	+				-0.1
3,740,482	-				+0.0
3,740,485	-				-0.3
3,740,487	+				+0.7
3,740,487	+				-3.5
3,740,487	+				+1.0
3,740,490	+				-1.9
3,740,495	-				-0.0
3,740,498	+				-1.9
3,740,498	+				-0.5
3,740,498	-				+0.4
3,740,504	-		Shew_3146	0.11	-0.9
3,740,506	-		Shew_3146	0.12	+0.4
3,740,506	-		Shew_3146	0.12	+0.1
3,740,548	+		Shew_3146	0.21	+1.0
3,740,559	+		Shew_3146	0.23	-0.4
3,740,559	+		Shew_3146	0.23	+0.3
3,740,559	+		Shew_3146	0.23	-1.7
3,740,566	-		Shew_3146	0.25	+1.4
3,740,576	-		Shew_3146	0.27	-1.1
3,740,586	+		Shew_3146	0.29	-0.6
3,740,586	+		Shew_3146	0.29	+0.4
3,740,616	-		Shew_3146	0.35	+1.8
3,740,626	-		Shew_3146	0.37	+0.0
3,740,647	+		Shew_3146	0.42	-2.1
3,740,647	+		Shew_3146	0.42	-1.7
3,740,647	+		Shew_3146	0.42	+2.1
3,740,647	+		Shew_3146	0.42	+0.2
3,740,655	-		Shew_3146	0.44	+0.8
3,740,690	+		Shew_3146	0.51	+2.8
3,740,695	+		Shew_3146	0.52	+2.8
3,740,704	+		Shew_3146	0.54	-0.4
3,740,714	+		Shew_3146	0.56	+1.4
3,740,716	+		Shew_3146	0.57	+0.7
3,740,747	-		Shew_3146	0.63	-0.4
3,740,862	+		Shew_3146	0.88	+0.7
3,740,863	+		Shew_3146	0.88	-0.3
3,740,863	+		Shew_3146	0.88	+0.2
3,740,863	+		Shew_3146	0.88	-0.0
3,740,863	+		Shew_3146	0.88	-2.4
3,740,863	+		Shew_3146	0.88	+0.5
3,740,863	+		Shew_3146	0.88	-1.4
3,740,863	+		Shew_3146	0.88	+0.5
3,740,863	+		Shew_3146	0.88	+0.5
3,740,863	+		Shew_3146	0.88	-0.2
3,740,863	+		Shew_3146	0.88	-0.1
3,740,863	+		Shew_3146	0.88	-0.5
3,740,863	+		Shew_3146	0.88	+0.3
3,740,871	-				-2.2
3,740,871	-				-2.9
3,740,871	-				-2.1
3,740,871	-				+0.2
3,740,871	-				-0.8
3,740,871	-				-2.8
3,740,871	-				+0.4
3,740,871	-				+1.2
3,740,871	-				-0.6
3,740,871	-				-3.4
3,740,871	-				-0.4
3,740,871	-				-1.8
3,740,881	-				+0.8
3,740,881	-				-0.6
3,740,932	-				+1.5
3,740,951	-				+0.3
3,740,959	-				+1.3
3,740,959	-				+1.6
3,740,969	-				+0.6
3,740,969	+				-1.0
3,740,983	-				+0.5
3,740,983	-				-3.6
3,740,988	+				-1.7
3,741,006	+				+0.6
3,741,006	+				-3.7
3,741,006	+				+0.7
3,741,006	+				-1.1
3,741,014	-				-0.5
3,741,018	+				+0.2
3,741,096	-				-0.3
3,741,141	-				+0.2
3,741,148	+				+1.0
3,741,156	-				+0.4
3,741,156	-				+0.0
3,741,156	+				+0.7
3,741,172	-				-0.2
3,741,220	-				+1.2
3,741,226	+				-2.7
3,741,226	+				-2.1
3,741,226	+				-0.2
3,741,226	+				+0.1
3,741,227	+				-0.2
3,741,230	-				-0.1
3,741,234	+				-0.6
3,741,240	+				-2.1
3,741,244	-				-3.5
3,741,244	-				+0.6
3,741,244	-				+1.0
3,741,248	+				-2.1
3,741,248	+				+1.2
3,741,256	-				-1.4
3,741,261	+				-1.5
3,741,261	+				+0.4
3,741,269	-				-1.8
3,741,313	+				+0.3
3,741,320	-				-0.0
3,741,338	+				-0.8
3,741,348	+				+0.2
3,741,360	+				-1.5
3,741,384	-				-0.5
3,741,403	-				-2.7
3,741,403	-				+0.5
3,741,430	-				+0.7
3,741,430	-				-2.0
3,741,434	+				-0.1
3,741,434	-				+1.5
3,741,439	+				-2.9
3,741,439	+				-0.1
3,741,439	+				+1.1
3,741,439	+				+0.2
3,741,439	+				+1.2
3,741,439	+				+0.1
3,741,439	+				-0.5
3,741,439	+				-2.8
3,741,439	+				-2.4
3,741,439	+				-0.1
3,741,439	+				+0.0
3,741,441	-				-0.1
3,741,446	+				-0.5
3,741,446	+				-0.9
3,741,446	+				-2.7
3,741,446	+				+0.1
3,741,446	+				+0.0
3,741,446	+				+0.2
3,741,446	+				-1.5
3,741,446	+				-0.5
3,741,446	+				+2.1
3,741,446	+				+0.8
3,741,446	+				-1.1
3,741,446	+				+0.8
3,741,446	+				-1.6
3,741,446	+				+1.2
3,741,446	+				-0.1
3,741,446	+				-2.2
3,741,447	-				+0.6
3,741,447	-				-2.7
3,741,447	-				+0.4
3,741,447	-				+1.2
3,741,447	-				-0.1
3,741,454	-				+1.3
3,741,454	-				-0.3
3,741,454	-				-0.8
3,741,454	-				-2.9
3,741,454	-				-0.7
3,741,454	-				-1.6
3,741,454	-				+0.5
3,741,454	-				+0.2
3,741,456	+				-0.5
3,741,469	+				-2.9
3,741,478	+				-0.1
3,741,478	+				-2.1
3,741,478	+				-0.1
3,741,486	-				-0.0
3,741,531	-				-1.1
3,741,555	+				-0.8
3,741,568	-				+0.4
3,741,570	+				+0.4
3,741,571	+				+0.4
3,741,573	-				+0.1
3,741,578	-				-0.3
3,741,596	+				-3.3
3,741,602	-				-3.1
3,741,613	-				+0.5
3,741,650	+				-3.5
3,741,652	-				-1.0
3,741,652	-				+0.3
3,741,658	-				-0.1
3,741,658	-				+0.9
3,741,658	-				-0.6
3,741,685	-				+1.1
3,741,707	+				+1.2
3,741,715	-				-1.0
3,741,715	-				+0.7
3,741,717	+				-1.4
3,741,717	+				-0.8
3,741,725	-				-0.7
3,741,725	-				+0.8
3,741,726	-				-0.2
3,741,732	+				+1.4
3,741,732	+				-1.8
3,741,732	+				+1.2
3,741,740	-				+0.0
3,741,758	-				+0.7
3,741,792	+				+0.2
3,741,792	+				+0.5
3,741,800	-				-2.8
3,741,807	+				-1.3
3,741,815	-				+1.0
3,741,851	+				+0.7