Strain Fitness in Shewanella loihica PV-4 around Shew_3134

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3132 and Shew_3133 are separated by 95 nucleotidesShew_3133 and Shew_3134 are separated by 16 nucleotidesShew_3134 and Shew_3135 are separated by 849 nucleotides Shew_3132: Shew_3132 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (RefSeq), at 3,724,413 to 3,724,901 _3132 Shew_3133: Shew_3133 - 3-methyl-2-oxobutanoate hydroxymethyltransferase (RefSeq), at 3,724,997 to 3,725,791 _3133 Shew_3134: Shew_3134 - pantoate--beta-alanine ligase (RefSeq), at 3,725,808 to 3,726,656 _3134 Shew_3135: Shew_3135 - L-lactate permease (RefSeq), at 3,727,506 to 3,729,149 _3135 Position (kb) 3725 3726 3727Strain fitness (log2 ratio) -3 -2 -1 0 1at 3726.650 kb on + strandat 3727.271 kb on - strandat 3727.320 kb on - strandat 3727.611 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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3,726,650 + -2.8
3,727,271 - +0.6
3,727,320 - +0.4
3,727,611 - -0.7

Or see this region's nucleotide sequence