Strain Fitness in Shewanella loihica PV-4 around Shew_2681

Experiment: Fumarate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fumarate (C)
3,172,935	+		Shew_2679	0.81	-0.4
3,173,127	-				+1.0
3,173,181	+				-0.4
3,173,223	+		Shew_2680	0.15	-0.2
3,173,223	+		Shew_2680	0.15	+0.1
3,173,231	-		Shew_2680	0.18	-1.7
3,173,233	+		Shew_2680	0.19	+2.3
3,173,252	-		Shew_2680	0.25	-0.3
3,173,281	-		Shew_2680	0.35	-1.0
3,173,281	-		Shew_2680	0.35	+1.0
3,173,295	+		Shew_2680	0.40	-0.1
3,173,295	+		Shew_2680	0.40	+1.1
3,173,301	+		Shew_2680	0.42	-1.0
3,173,301	+		Shew_2680	0.42	+3.8
3,173,329	+		Shew_2680	0.52	+2.8
3,173,332	-		Shew_2680	0.53	-0.8
3,173,332	-		Shew_2680	0.53	+0.6
3,173,337	-		Shew_2680	0.55	-1.4
3,173,342	-		Shew_2680	0.57	+0.2
3,173,342	-		Shew_2680	0.57	+1.4
3,173,355	-		Shew_2680	0.61	+1.3
3,173,381	+		Shew_2680	0.70	-0.1
3,173,381	+		Shew_2680	0.70	-0.6
3,173,406	-		Shew_2680	0.79	+0.4
3,173,415	-		Shew_2680	0.82	-0.2
3,173,431	+		Shew_2680	0.88	+0.8
3,173,434	-		Shew_2680	0.89	-0.2
3,173,446	+				-1.0
3,173,449	+				+0.6
3,173,452	-				-0.3
3,173,452	-				+0.1
3,173,469	-				+0.7
3,173,609	+				+1.0
3,173,609	+				-0.5
3,173,609	+				+0.5
3,173,609	+				-1.1
3,173,609	+				+1.9
3,173,609	+				+0.2
3,173,609	+				+0.2
3,173,609	+				+3.4
3,173,609	+				+0.9
3,173,609	+				-1.1
3,173,609	+				-1.1
3,173,609	+				-0.2
3,173,609	+				+0.2
3,173,609	+				-2.2
3,173,609	+				+1.5
3,173,609	+				-0.3
3,173,609	+				+0.3
3,173,609	+				-2.2
3,173,609	+				+0.2
3,173,609	+				-0.9
3,173,609	+				-3.0
3,173,609	+				-3.0
3,173,609	+				+0.4
3,173,609	+				+0.8
3,173,609	+				-1.7
3,173,609	+				-4.0
3,173,609	+				-0.2
3,173,609	+				+0.5
3,173,609	+				+0.4
3,173,609	+				-1.9
3,173,609	+				+0.1
3,173,609	+				+1.2
3,173,609	+				+0.4
3,173,609	+				+0.6
3,173,609	+				+0.1
3,173,609	+				-0.3
3,173,609	+				+0.7
3,173,609	+				-1.3
3,173,609	+				-0.4
3,173,609	+				-1.3
3,173,609	+				-2.6
3,173,609	+				+0.2
3,173,609	+				-1.1
3,173,609	+				-0.2
3,173,609	+				+1.1
3,173,609	+				+3.1
3,173,609	+				-0.7
3,173,609	+				-1.6
3,173,609	+				+0.2
3,173,609	+				+0.5
3,173,609	+				-3.6
3,173,609	+				+2.6
3,173,609	+				-0.2
3,173,609	+				-2.0
3,173,609	+				+1.4
3,173,609	+				-1.0
3,173,609	+				+1.1
3,173,609	+				-0.1
3,173,609	+				+0.3
3,173,617	-				+1.3
3,173,617	-				+0.5
3,173,617	-				-1.6
3,173,617	-				-2.1
3,173,617	-				+1.2
3,173,617	-				-0.2
3,173,617	-				-0.5
3,173,617	-				-1.6
3,173,617	-				+0.3
3,173,617	-				+0.4
3,173,617	-				+1.6
3,173,617	-				+0.3
3,173,617	-				-1.4
3,173,617	-				+0.2
3,173,617	-				+0.0
3,173,617	-				-0.4
3,173,617	-				-0.7
3,173,617	-				-0.1
3,173,617	-				+0.2
3,173,617	-				+0.6
3,173,617	-				+0.3
3,173,617	-				+0.7
3,173,617	-				-0.5
3,173,617	-				+0.6
3,173,617	-				-0.4
3,173,617	-				+2.9
3,173,617	-				-2.1
3,173,617	-				+0.4
3,173,617	-				+0.2
3,173,617	-				-0.6
3,173,617	-				-3.5
3,173,617	-				-4.0
3,173,617	-				-1.0
3,173,617	-				+2.3
3,173,617	-				+0.2
3,173,617	-				-1.4
3,173,617	-				+1.2
3,173,617	-				-1.4
3,173,617	-				+1.3
3,173,617	-				-2.6
3,173,617	-				+0.5
3,173,617	-				+0.2
3,173,617	-				-3.7
3,173,617	-				-2.0
3,173,617	-				-1.1
3,173,617	-				+0.1
3,173,628	+				-0.1
3,173,651	+				+1.4
3,173,651	+				-0.4
3,173,651	+				+3.2
3,173,651	+				-3.0
3,173,659	-				-0.2
3,173,659	-				-0.5
3,173,659	-				-1.2
3,173,659	-				-2.0
3,173,659	-				-0.4
3,173,659	-				-1.2
3,173,674	+				+0.5
3,173,722	+				-1.4
3,173,761	+				-0.3
3,173,769	-				+0.4
3,173,817	+				-2.2
3,173,828	+				+1.1
3,173,828	+				+0.4
3,173,828	+				-2.5
3,173,828	+				+0.5
3,173,836	-				+1.6
3,173,836	-				-1.8
3,173,863	+				-0.8
3,173,870	-				-1.4
3,173,877	-				+0.6
3,173,911	-				-0.0
3,173,929	+				-2.4
3,173,929	+				-3.6
3,173,929	+				-2.7
3,173,936	-				+0.5
3,173,949	+				+0.2
3,173,949	+				+2.8
3,173,958	-				+0.2
3,173,971	+		Shew_2681	0.10	+2.4
3,173,985	-		Shew_2681	0.11	-1.1
3,173,998	+		Shew_2681	0.12	+0.8
3,173,999	+		Shew_2681	0.12	-0.9
3,174,006	-		Shew_2681	0.13	+0.0
3,174,006	-		Shew_2681	0.13	+2.8
3,174,007	-		Shew_2681	0.13	-0.4
3,174,008	+		Shew_2681	0.13	-2.8
3,174,011	-		Shew_2681	0.13	+0.3
3,174,016	-		Shew_2681	0.14	+2.7
3,174,024	-		Shew_2681	0.14	+1.7
3,174,035	+		Shew_2681	0.15	-3.4
3,174,043	-		Shew_2681	0.16	-0.8
3,174,100	-		Shew_2681	0.20	-2.5
3,174,128	-		Shew_2681	0.22	-2.1
3,174,228	-		Shew_2681	0.30	-0.2
3,174,264	+		Shew_2681	0.32	+1.3
3,174,370	-		Shew_2681	0.40	-0.5
3,174,469	-		Shew_2681	0.48	-0.4
3,174,476	-		Shew_2681	0.48	-0.8
3,174,525	-		Shew_2681	0.52	+0.6
3,174,525	-		Shew_2681	0.52	+0.4
3,174,588	+		Shew_2681	0.57	-0.6
3,174,588	+		Shew_2681	0.57	-0.2
3,174,596	-		Shew_2681	0.58	+1.2
3,174,596	-		Shew_2681	0.58	-0.9
3,174,651	+		Shew_2681	0.62	+0.0
3,174,651	+		Shew_2681	0.62	-3.5
3,174,651	+		Shew_2681	0.62	+0.2
3,174,659	-		Shew_2681	0.62	+0.4
3,174,676	-		Shew_2681	0.64	+1.1
3,174,686	+		Shew_2681	0.64	-0.1
3,174,686	+		Shew_2681	0.64	-1.0
3,174,694	-		Shew_2681	0.65	-0.8
3,174,912	-		Shew_2681	0.82	-1.5
3,175,004	-		Shew_2681	0.89	+0.6
3,175,036	+				-3.2
3,175,075	+				+0.0
3,175,114	+				-1.3
3,175,114	+				+1.0
3,175,122	+				-0.8
3,175,129	+				+2.7
3,175,143	-				-0.5
3,175,144	+				+0.9
3,175,144	+				+0.8
3,175,144	+				+0.3
3,175,144	+				+0.1
3,175,149	+				+0.5
3,175,149	+				+0.5
3,175,149	+				-2.6
3,175,149	+				+0.1
3,175,149	+				-0.0
3,175,149	+				-1.1
3,175,149	+				-2.0
3,175,152	-				-2.5
3,175,152	-				+0.6
3,175,152	-				+1.8
3,175,152	-				-0.1
3,175,152	-				-0.6
3,175,152	-				+1.9
3,175,152	-				+0.8
3,175,154	+				-0.5
3,175,154	+				-0.4
3,175,154	+				-1.4
3,175,154	+				+1.3
3,175,154	+				+0.9
3,175,154	+				-0.2
3,175,157	+				+0.5
3,175,162	-				-1.0
3,175,162	-				+0.5
3,175,162	-				+0.8
3,175,162	-				-0.8
3,175,162	-				-0.4
3,175,197	+				-0.3
3,175,197	+				+1.5
3,175,202	+				+0.0
3,175,205	-				+1.0
3,175,205	-				-1.7
3,175,205	-				-0.8
3,175,205	-				-0.1
3,175,205	-				-1.5
3,175,210	-				-1.4
3,175,210	-				-0.2
3,175,216	+				+2.2
3,175,281	+				-0.1
3,175,281	+				-0.0
3,175,281	+				+0.6
3,175,281	+				+0.7
3,175,281	+				+0.4
3,175,289	+				+1.5
3,175,289	-				+1.2
3,175,291	+				+0.6
3,175,291	+				+0.6
3,175,296	+				-0.8
3,175,297	-				+0.9
3,175,297	+				+0.5
3,175,297	-				-0.1
3,175,297	-				+0.3
3,175,297	-				-0.4
3,175,297	-				-0.5
3,175,297	-				-0.8
3,175,304	-				+0.6
3,175,305	+				+0.6
3,175,306	-				-0.1
3,175,308	-				-0.6
3,175,313	-				-3.0
3,175,313	-				+1.1
3,175,446	+				+1.4
3,175,446	+				+0.4
3,175,446	+				-0.2
3,175,456	+				+1.6
3,175,459	+				+0.1
3,175,464	+				+0.2
3,175,464	+				-2.3
3,175,464	+				+0.8
3,175,464	+				+0.2
3,175,466	+				+0.9
3,175,466	+				-0.1
3,175,472	-				-3.9
3,175,472	-				+1.4
3,175,474	+				-2.0
3,175,483	-				+0.0
3,175,561	+		Shew_2682	0.13	+0.0
3,175,569	-		Shew_2682	0.14	-2.0
3,175,569	-		Shew_2682	0.14	+0.5
3,175,581	+		Shew_2682	0.15	+3.0
3,175,583	-		Shew_2682	0.15	+0.6
3,175,583	+		Shew_2682	0.15	+0.2
3,175,589	-		Shew_2682	0.15	+1.2
3,175,602	-		Shew_2682	0.16	-0.2
3,175,604	+		Shew_2682	0.17	+1.0
3,175,642	+		Shew_2682	0.20	-0.2
3,175,653	+		Shew_2682	0.21	+0.6
3,175,653	+		Shew_2682	0.21	-0.4
3,175,685	+		Shew_2682	0.24	-3.2
3,175,685	+		Shew_2682	0.24	+0.2
3,175,722	+		Shew_2682	0.27	+0.7
3,175,730	-		Shew_2682	0.28	+0.4
3,175,738	+		Shew_2682	0.29	-0.9
3,175,738	+		Shew_2682	0.29	+0.5
3,175,738	+		Shew_2682	0.29	+0.5
3,175,739	-		Shew_2682	0.29	+0.2
3,175,788	+		Shew_2682	0.33	+0.4
3,175,801	-		Shew_2682	0.34	+0.2
3,175,895	-		Shew_2682	0.42	-0.2
3,176,125	-		Shew_2682	0.63	-0.8
3,176,135	-		Shew_2682	0.64	-1.6