Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2436 and Shew_2437 are separated by 105 nucleotides Shew_2437 and Shew_2438 are separated by 74 nucleotides Shew_2438 and Shew_2439 are separated by 114 nucleotides
Shew_2436: Shew_2436 - membrane protein involved in aromatic hydrocarbon degradation (RefSeq), at 2,863,837 to 2,865,153
_2436
Shew_2437: Shew_2437 - hypothetical protein (RefSeq), at 2,865,259 to 2,865,645
_2437
Shew_2438: Shew_2438 - hypothetical protein (RefSeq), at 2,865,720 to 2,866,430
_2438
Shew_2439: Shew_2439 - RND family efflux transporter MFP subunit (RefSeq), at 2,866,545 to 2,867,561
_2439
Position (kb) 2865
2866 Strain fitness (log2 ratio) -2
-1
0
1
2 at 2864.308 kb on - strand, within Shew_2436 at 2864.841 kb on + strand, within Shew_2436 at 2864.859 kb on + strand, within Shew_2436 at 2865.125 kb on + strand at 2865.125 kb on + strand at 2865.247 kb on - strand at 2865.381 kb on - strand, within Shew_2437 at 2865.642 kb on - strand at 2866.051 kb on - strand, within Shew_2438
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 2,864,308 - Shew_2436 0.36 +1.2 2,864,841 + Shew_2436 0.76 -0.4 2,864,859 + Shew_2436 0.78 +2.0 2,865,125 + +0.2 2,865,125 + -0.4 2,865,247 - -0.2 2,865,381 - Shew_2437 0.32 -1.8 2,865,642 - +1.0 2,866,051 - Shew_2438 0.47 -1.6
Or see this region's nucleotide sequence