Strain Fitness in Shewanella loihica PV-4 around Shew_1842

Experiment: Fumarate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_1841 and Shew_1842 are separated by 169 nucleotidesShew_1842 and Shew_1843 are separated by 169 nucleotides Shew_1841: Shew_1841 - peptidase M48, Ste24p (RefSeq), at 2,117,114 to 2,118,571 _1841 Shew_1842: Shew_1842 - SirA family protein (RefSeq), at 2,118,741 to 2,118,962 _1842 Shew_1843: Shew_1843 - hypothetical protein (RefSeq), at 2,119,132 to 2,120,232 _1843 Position (kb) 2118 2119Strain fitness (log2 ratio) -2 -1 0 1at 2117.923 kb on - strand, within Shew_1841at 2118.009 kb on + strand, within Shew_1841at 2118.017 kb on - strand, within Shew_1841at 2118.148 kb on + strand, within Shew_1841at 2118.842 kb on + strand, within Shew_1842at 2119.479 kb on - strand, within Shew_1843

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
remove
2,117,923 - Shew_1841 0.55 -1.1
2,118,009 + Shew_1841 0.61 -0.5
2,118,017 - Shew_1841 0.62 +1.4
2,118,148 + Shew_1841 0.71 +0.4
2,118,842 + Shew_1842 0.45 -1.9
2,119,479 - Shew_1843 0.32 -1.8

Or see this region's nucleotide sequence