Strain Fitness in Shewanella loihica PV-4 around Shew_1722

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1721 and Shew_1722 are separated by 15 nucleotidesShew_1722 and Shew_1723 are separated by 316 nucleotides Shew_1721: Shew_1721 - methyltransferase type 11 (RefSeq), at 1,975,224 to 1,976,153 _1721 Shew_1722: Shew_1722 - dethiobiotin synthase (RefSeq), at 1,976,169 to 1,976,882 _1722 Shew_1723: Shew_1723 - heat shock protein HtpX (RefSeq), at 1,977,199 to 1,978,062 _1723 Position (kb) 1976 1977Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1975.321 kb on + strand, within Shew_1721at 1975.850 kb on + strand, within Shew_1721at 1976.853 kb on - strandat 1977.018 kb on + strandat 1977.161 kb on + strandat 1977.678 kb on + strand, within Shew_1723at 1977.858 kb on + strand, within Shew_1723

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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1,975,321 + Shew_1721 0.10 -2.1
1,975,850 + Shew_1721 0.67 +3.3
1,976,853 - -0.8
1,977,018 + -2.2
1,977,161 + -0.1
1,977,678 + Shew_1723 0.55 -0.8
1,977,858 + Shew_1723 0.76 -2.2

Or see this region's nucleotide sequence