Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1357 and Shew_1358 are separated by 104 nucleotides Shew_1358 and Shew_1359 are separated by 30 nucleotides Shew_1359 and Shew_1360 are separated by 27 nucleotides Shew_1360 and fliS are separated by 6 nucleotides
Shew_1357: Shew_1357 - flagellin domain-containing protein (RefSeq), at 1,566,690 to 1,567,508
_1357
Shew_1358: Shew_1358 - flagellar protein FlaG protein (RefSeq), at 1,567,613 to 1,568,002
_1358
Shew_1359: Shew_1359 - flagellar hook-associated 2 domain-containing protein (RefSeq), at 1,568,033 to 1,569,406
_1359
Shew_1360: Shew_1360 - hypothetical protein (RefSeq), at 1,569,434 to 1,569,754
_1360
Shew_1361: fliS - flagellar protein FliS (RefSeq), at 1,569,761 to 1,570,171
fliS
Position (kb)
1568
1569
1570 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1567.308 kb on + strand, within Shew_1357 at 1567.355 kb on + strand, within Shew_1357 at 1567.363 kb on - strand, within Shew_1357 at 1567.363 kb on - strand, within Shew_1357 at 1567.539 kb on + strand at 1567.601 kb on + strand at 1567.948 kb on - strand, within Shew_1358 at 1568.005 kb on - strand at 1568.627 kb on - strand, within Shew_1359 at 1568.853 kb on + strand, within Shew_1359 at 1569.186 kb on + strand, within Shew_1359 at 1569.872 kb on + strand, within fliS at 1569.872 kb on + strand, within fliS at 1570.141 kb on + strand at 1570.236 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 1,567,308 + Shew_1357 0.75 +2.2 1,567,355 + Shew_1357 0.81 +2.1 1,567,363 - Shew_1357 0.82 +2.7 1,567,363 - Shew_1357 0.82 +3.4 1,567,539 + +0.9 1,567,601 + -2.2 1,567,948 - Shew_1358 0.86 +2.7 1,568,005 - +4.2 1,568,627 - Shew_1359 0.43 +1.8 1,568,853 + Shew_1359 0.60 +2.7 1,569,186 + Shew_1359 0.84 -0.9 1,569,872 + fliS Shew_1361 0.27 +2.7 1,569,872 + fliS Shew_1361 0.27 +2.3 1,570,141 + +0.4 1,570,236 - +0.6
Or see this region's nucleotide sequence