Strain Fitness in Shewanella loihica PV-4 around Shew_1359

Experiment: Fumarate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_1357 and Shew_1358 are separated by 104 nucleotidesShew_1358 and Shew_1359 are separated by 30 nucleotidesShew_1359 and Shew_1360 are separated by 27 nucleotidesShew_1360 and fliS are separated by 6 nucleotides Shew_1357: Shew_1357 - flagellin domain-containing protein (RefSeq), at 1,566,690 to 1,567,508 _1357 Shew_1358: Shew_1358 - flagellar protein FlaG protein (RefSeq), at 1,567,613 to 1,568,002 _1358 Shew_1359: Shew_1359 - flagellar hook-associated 2 domain-containing protein (RefSeq), at 1,568,033 to 1,569,406 _1359 Shew_1360: Shew_1360 - hypothetical protein (RefSeq), at 1,569,434 to 1,569,754 _1360 Shew_1361: fliS - flagellar protein FliS (RefSeq), at 1,569,761 to 1,570,171 fliS Position (kb) 1568 1569 1570Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1567.308 kb on + strand, within Shew_1357at 1567.355 kb on + strand, within Shew_1357at 1567.363 kb on - strand, within Shew_1357at 1567.363 kb on - strand, within Shew_1357at 1567.539 kb on + strandat 1567.601 kb on + strandat 1567.948 kb on - strand, within Shew_1358at 1568.005 kb on - strandat 1568.627 kb on - strand, within Shew_1359at 1568.853 kb on + strand, within Shew_1359at 1569.186 kb on + strand, within Shew_1359at 1569.872 kb on + strand, within fliSat 1569.872 kb on + strand, within fliSat 1570.141 kb on + strandat 1570.236 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
remove
1,567,308 + Shew_1357 0.75 +2.2
1,567,355 + Shew_1357 0.81 +2.1
1,567,363 - Shew_1357 0.82 +2.7
1,567,363 - Shew_1357 0.82 +3.4
1,567,539 + +0.9
1,567,601 + -2.2
1,567,948 - Shew_1358 0.86 +2.7
1,568,005 - +4.2
1,568,627 - Shew_1359 0.43 +1.8
1,568,853 + Shew_1359 0.60 +2.7
1,569,186 + Shew_1359 0.84 -0.9
1,569,872 + fliS Shew_1361 0.27 +2.7
1,569,872 + fliS Shew_1361 0.27 +2.3
1,570,141 + +0.4
1,570,236 - +0.6

Or see this region's nucleotide sequence