Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0818 and Shew_0819 are separated by 40 nucleotides Shew_0819 and Shew_0820 are separated by 49 nucleotides Shew_0820 and Shew_0821 are separated by 156 nucleotides Shew_0821 and Shew_0822 are separated by 66 nucleotides
Shew_0818: Shew_0818 - peptidase U32 (RefSeq), at 941,285 to 943,198
_0818
Shew_0819: Shew_0819 - hypothetical protein (RefSeq), at 943,239 to 943,613
_0819
Shew_0820: Shew_0820 - hypothetical protein (RefSeq), at 943,663 to 944,850
_0820
Shew_0821: Shew_0821 - mitomycin resistance protein (RefSeq), at 945,007 to 945,294
_0821
Shew_0822: Shew_0822 - lysine exporter protein LysE/YggA (RefSeq), at 945,361 to 945,954
_0822
Position (kb) 943
944
945 Strain fitness (log2 ratio) -1
0
1
2 at 942.721 kb on - strand, within Shew_0818 at 942.896 kb on + strand, within Shew_0818 at 943.632 kb on - strand at 943.666 kb on + strand at 943.732 kb on - strand at 943.825 kb on - strand, within Shew_0820 at 943.926 kb on + strand, within Shew_0820 at 943.926 kb on + strand, within Shew_0820 at 943.926 kb on + strand, within Shew_0820 at 943.934 kb on - strand, within Shew_0820 at 943.934 kb on - strand, within Shew_0820 at 944.183 kb on - strand, within Shew_0820 at 944.701 kb on + strand, within Shew_0820 at 945.195 kb on + strand, within Shew_0821 at 945.535 kb on + strand, within Shew_0822 at 945.758 kb on + strand, within Shew_0822
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 942,721 - Shew_0818 0.75 -0.5 942,896 + Shew_0818 0.84 +0.9 943,632 - -0.3 943,666 + -0.1 943,732 - -0.1 943,825 - Shew_0820 0.14 -0.7 943,926 + Shew_0820 0.22 +0.2 943,926 + Shew_0820 0.22 +0.3 943,926 + Shew_0820 0.22 +1.9 943,934 - Shew_0820 0.23 +0.6 943,934 - Shew_0820 0.23 +0.7 944,183 - Shew_0820 0.44 +0.9 944,701 + Shew_0820 0.87 -0.1 945,195 + Shew_0821 0.65 -1.4 945,535 + Shew_0822 0.29 +0.3 945,758 + Shew_0822 0.67 +0.2
Or see this region's nucleotide sequence