Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0808 and Shew_0809 are separated by 105 nucleotides Shew_0809 and Shew_0810 are separated by 265 nucleotides
Shew_0808: Shew_0808 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 925,401 to 927,065
_0808
Shew_0809: Shew_0809 - formate dehydrogenase, alpha subunit (RefSeq), at 927,171 to 931,403
_0809
Shew_0810: Shew_0810 - ion transport 2 domain-containing protein (RefSeq), at 931,669 to 932,649
_0810
Position (kb) 927
928
929
930
931
932 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 926.232 kb on + strand, within Shew_0808 at 926.374 kb on + strand, within Shew_0808 at 926.382 kb on - strand, within Shew_0808 at 926.395 kb on + strand, within Shew_0808 at 926.403 kb on - strand, within Shew_0808 at 926.525 kb on - strand, within Shew_0808 at 926.549 kb on + strand, within Shew_0808 at 926.770 kb on + strand, within Shew_0808 at 927.053 kb on + strand at 927.060 kb on - strand at 927.072 kb on + strand at 927.072 kb on + strand at 927.306 kb on + strand at 927.644 kb on + strand, within Shew_0809 at 927.644 kb on + strand, within Shew_0809 at 927.652 kb on - strand, within Shew_0809 at 927.652 kb on - strand, within Shew_0809 at 927.652 kb on - strand, within Shew_0809 at 927.652 kb on - strand, within Shew_0809 at 927.700 kb on - strand, within Shew_0809 at 927.720 kb on + strand, within Shew_0809 at 927.738 kb on + strand, within Shew_0809 at 927.836 kb on + strand, within Shew_0809 at 927.844 kb on - strand, within Shew_0809 at 927.846 kb on + strand, within Shew_0809 at 928.037 kb on + strand, within Shew_0809 at 928.037 kb on + strand, within Shew_0809 at 928.040 kb on - strand, within Shew_0809 at 928.075 kb on - strand, within Shew_0809 at 928.152 kb on - strand, within Shew_0809 at 928.172 kb on - strand, within Shew_0809 at 928.180 kb on - strand, within Shew_0809 at 928.495 kb on - strand, within Shew_0809 at 928.584 kb on - strand, within Shew_0809 at 928.815 kb on + strand, within Shew_0809 at 928.862 kb on + strand, within Shew_0809 at 929.101 kb on - strand, within Shew_0809 at 929.257 kb on + strand, within Shew_0809 at 929.312 kb on + strand, within Shew_0809 at 929.315 kb on + strand, within Shew_0809 at 929.359 kb on + strand, within Shew_0809 at 929.497 kb on - strand, within Shew_0809 at 929.637 kb on - strand, within Shew_0809 at 929.707 kb on - strand, within Shew_0809 at 929.755 kb on + strand, within Shew_0809 at 929.763 kb on - strand, within Shew_0809 at 929.763 kb on - strand, within Shew_0809 at 930.074 kb on - strand, within Shew_0809 at 930.135 kb on + strand, within Shew_0809 at 930.143 kb on - strand, within Shew_0809 at 930.304 kb on - strand, within Shew_0809 at 930.349 kb on + strand, within Shew_0809 at 930.411 kb on + strand, within Shew_0809 at 930.419 kb on - strand, within Shew_0809 at 930.429 kb on - strand, within Shew_0809 at 930.731 kb on + strand, within Shew_0809 at 930.786 kb on + strand, within Shew_0809 at 931.046 kb on + strand at 931.054 kb on - strand at 931.054 kb on - strand at 931.087 kb on - strand at 931.197 kb on + strand at 931.317 kb on + strand at 931.534 kb on - strand at 931.653 kb on + strand at 932.197 kb on + strand, within Shew_0810 at 932.327 kb on - strand, within Shew_0810 at 932.349 kb on + strand, within Shew_0810
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 926,232 + Shew_0808 0.50 -0.6 926,374 + Shew_0808 0.58 +1.2 926,382 - Shew_0808 0.59 -2.7 926,395 + Shew_0808 0.60 +0.4 926,403 - Shew_0808 0.60 -0.3 926,525 - Shew_0808 0.68 +0.6 926,549 + Shew_0808 0.69 -0.0 926,770 + Shew_0808 0.82 +1.8 927,053 + -0.4 927,060 - +0.3 927,072 + +1.3 927,072 + -2.1 927,306 + -0.4 927,644 + Shew_0809 0.11 -0.0 927,644 + Shew_0809 0.11 -0.1 927,652 - Shew_0809 0.11 +0.6 927,652 - Shew_0809 0.11 -0.5 927,652 - Shew_0809 0.11 +0.7 927,652 - Shew_0809 0.11 +1.2 927,700 - Shew_0809 0.12 +0.6 927,720 + Shew_0809 0.13 +0.8 927,738 + Shew_0809 0.13 -0.1 927,836 + Shew_0809 0.16 -1.9 927,844 - Shew_0809 0.16 -0.0 927,846 + Shew_0809 0.16 +0.4 928,037 + Shew_0809 0.20 +0.3 928,037 + Shew_0809 0.20 -0.1 928,040 - Shew_0809 0.21 +0.8 928,075 - Shew_0809 0.21 -1.2 928,152 - Shew_0809 0.23 +1.0 928,172 - Shew_0809 0.24 +0.5 928,180 - Shew_0809 0.24 +1.0 928,495 - Shew_0809 0.31 +0.0 928,584 - Shew_0809 0.33 +0.1 928,815 + Shew_0809 0.39 +0.0 928,862 + Shew_0809 0.40 -2.3 929,101 - Shew_0809 0.46 +0.2 929,257 + Shew_0809 0.49 -0.8 929,312 + Shew_0809 0.51 +1.2 929,315 + Shew_0809 0.51 -0.1 929,359 + Shew_0809 0.52 -0.2 929,497 - Shew_0809 0.55 +0.2 929,637 - Shew_0809 0.58 +0.4 929,707 - Shew_0809 0.60 +0.3 929,755 + Shew_0809 0.61 -1.3 929,763 - Shew_0809 0.61 +0.3 929,763 - Shew_0809 0.61 -0.7 930,074 - Shew_0809 0.69 -0.2 930,135 + Shew_0809 0.70 +1.5 930,143 - Shew_0809 0.70 -4.5 930,304 - Shew_0809 0.74 -3.5 930,349 + Shew_0809 0.75 -1.0 930,411 + Shew_0809 0.77 +0.4 930,419 - Shew_0809 0.77 +0.0 930,429 - Shew_0809 0.77 +0.8 930,731 + Shew_0809 0.84 +0.4 930,786 + Shew_0809 0.85 +0.2 931,046 + -0.1 931,054 - -0.4 931,054 - -1.0 931,087 - +0.3 931,197 + -0.1 931,317 + -0.2 931,534 - +0.6 931,653 + +0.0 932,197 + Shew_0810 0.54 -0.0 932,327 - Shew_0810 0.67 -0.5 932,349 + Shew_0810 0.69 -0.5
Or see this region's nucleotide sequence