Strain Fitness in Shewanella loihica PV-4 around Shew_0768

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0767 and Shew_0768 are separated by 50 nucleotidesShew_0768 and Shew_0769 are separated by 508 nucleotides Shew_0767: Shew_0767 - ATP-dependent RNA helicase SrmB (RefSeq), at 875,149 to 876,408 _0767 Shew_0768: Shew_0768 - methyltransferase small (RefSeq), at 876,459 to 877,190 _0768 Shew_0769: Shew_0769 - branched-chain amino acid transport system II carrier protein (RefSeq), at 877,699 to 879,030 _0769 Position (kb) 876 877 878Strain fitness (log2 ratio) -1 0 1at 876.117 kb on + strand, within Shew_0767at 876.266 kb on - strand, within Shew_0767at 876.288 kb on + strandat 876.457 kb on + strandat 876.865 kb on - strand, within Shew_0768at 876.983 kb on - strand, within Shew_0768at 877.213 kb on - strandat 877.506 kb on + strandat 877.741 kb on + strandat 877.849 kb on - strand, within Shew_0769at 877.987 kb on - strand, within Shew_0769at 878.054 kb on + strand, within Shew_0769at 878.092 kb on - strand, within Shew_0769

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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876,117 + Shew_0767 0.77 -0.2
876,266 - Shew_0767 0.89 -0.2
876,288 + -1.5
876,457 + -0.5
876,865 - Shew_0768 0.55 +1.4
876,983 - Shew_0768 0.72 +0.3
877,213 - -0.1
877,506 + +0.5
877,741 + -0.9
877,849 - Shew_0769 0.11 +0.0
877,987 - Shew_0769 0.22 +0.3
878,054 + Shew_0769 0.27 -0.4
878,092 - Shew_0769 0.30 +0.5

Or see this region's nucleotide sequence