Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0725 and Shew_0726 are separated by 127 nucleotides Shew_0726 and Shew_0727 overlap by 1 nucleotides
Shew_0725: Shew_0725 - hypothetical protein (RefSeq), at 824,767 to 825,963
_0725
Shew_0726: Shew_0726 - two component, sigma54 specific, Fis family transcriptional regulator (RefSeq), at 826,091 to 827,575
_0726
Shew_0727: Shew_0727 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 827,575 to 828,948
_0727
Position (kb) 826
827
828 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 825.161 kb on + strand, within Shew_0725 at 825.257 kb on + strand, within Shew_0725 at 825.632 kb on + strand, within Shew_0725 at 825.640 kb on - strand, within Shew_0725 at 825.645 kb on - strand, within Shew_0725 at 825.733 kb on - strand, within Shew_0725 at 825.755 kb on - strand, within Shew_0725 at 826.411 kb on + strand, within Shew_0726 at 826.576 kb on - strand, within Shew_0726 at 826.622 kb on - strand, within Shew_0726 at 826.950 kb on - strand, within Shew_0726 at 827.125 kb on + strand, within Shew_0726 at 827.149 kb on + strand, within Shew_0726 at 827.157 kb on + strand, within Shew_0726 at 827.157 kb on + strand, within Shew_0726 at 827.286 kb on + strand, within Shew_0726 at 827.309 kb on - strand, within Shew_0726 at 827.639 kb on + strand at 827.684 kb on - strand at 828.259 kb on - strand, within Shew_0727 at 828.418 kb on - strand, within Shew_0727
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 825,161 + Shew_0725 0.33 -1.2 825,257 + Shew_0725 0.41 +0.2 825,632 + Shew_0725 0.72 -2.9 825,640 - Shew_0725 0.73 -2.8 825,645 - Shew_0725 0.73 +1.2 825,733 - Shew_0725 0.81 +2.4 825,755 - Shew_0725 0.83 -0.9 826,411 + Shew_0726 0.22 +3.2 826,576 - Shew_0726 0.33 -1.1 826,622 - Shew_0726 0.36 +0.5 826,950 - Shew_0726 0.58 -0.2 827,125 + Shew_0726 0.70 -0.3 827,149 + Shew_0726 0.71 +0.5 827,157 + Shew_0726 0.72 +0.5 827,157 + Shew_0726 0.72 -2.1 827,286 + Shew_0726 0.80 +0.3 827,309 - Shew_0726 0.82 +0.2 827,639 + -2.5 827,684 - +1.1 828,259 - Shew_0727 0.50 +0.3 828,418 - Shew_0727 0.61 +0.2
Or see this region's nucleotide sequence