Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0700 and Shew_0701 are separated by 357 nucleotides Shew_0701 and Shew_0702 are separated by 14 nucleotides Shew_0702 and Shew_0703 are separated by 183 nucleotides Shew_0703 and Shew_0704 are separated by 186 nucleotides
Shew_0700: Shew_0700 - pirin domain-containing protein (RefSeq), at 794,970 to 795,830
_0700
Shew_0701: Shew_0701 - hypothetical protein (RefSeq), at 796,188 to 796,769
_0701
Shew_0702: Shew_0702 - rhomboid family protein (RefSeq), at 796,784 to 797,866
_0702
Shew_0703: Shew_0703 - response regulator receiver protein (RefSeq), at 798,050 to 798,412
_0703
Shew_0704: Shew_0704 - hypothetical protein (RefSeq), at 798,599 to 799,195
_0704
Position (kb) 796
797
798 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 795.856 kb on + strand at 796.011 kb on + strand at 796.220 kb on + strand at 796.404 kb on - strand, within Shew_0701 at 796.406 kb on + strand, within Shew_0701 at 796.503 kb on - strand, within Shew_0701 at 796.505 kb on + strand, within Shew_0701 at 796.553 kb on - strand, within Shew_0701 at 796.661 kb on + strand, within Shew_0701 at 796.667 kb on + strand, within Shew_0701 at 796.668 kb on + strand, within Shew_0701 at 796.698 kb on - strand, within Shew_0701 at 796.728 kb on - strand at 796.897 kb on + strand, within Shew_0702 at 796.912 kb on + strand, within Shew_0702 at 796.920 kb on - strand, within Shew_0702 at 796.920 kb on - strand, within Shew_0702 at 797.179 kb on + strand, within Shew_0702 at 797.297 kb on - strand, within Shew_0702 at 797.463 kb on - strand, within Shew_0702 at 797.473 kb on - strand, within Shew_0702 at 797.677 kb on - strand, within Shew_0702 at 797.849 kb on - strand at 797.955 kb on + strand at 797.963 kb on - strand at 797.963 kb on - strand at 798.134 kb on - strand, within Shew_0703 at 798.162 kb on + strand, within Shew_0703 at 798.251 kb on + strand, within Shew_0703 at 798.373 kb on + strand, within Shew_0703 at 798.435 kb on + strand at 798.503 kb on + strand at 798.526 kb on + strand at 798.677 kb on + strand, within Shew_0704 at 798.701 kb on - strand, within Shew_0704 at 798.861 kb on - strand, within Shew_0704
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 795,856 + +0.2 796,011 + +0.2 796,220 + -0.8 796,404 - Shew_0701 0.37 -1.2 796,406 + Shew_0701 0.37 +0.5 796,503 - Shew_0701 0.54 -1.2 796,505 + Shew_0701 0.54 -0.0 796,553 - Shew_0701 0.63 -2.5 796,661 + Shew_0701 0.81 +0.2 796,667 + Shew_0701 0.82 +0.5 796,668 + Shew_0701 0.82 +0.1 796,698 - Shew_0701 0.88 +0.5 796,728 - +1.0 796,897 + Shew_0702 0.10 +0.2 796,912 + Shew_0702 0.12 -0.3 796,920 - Shew_0702 0.13 -1.1 796,920 - Shew_0702 0.13 -1.0 797,179 + Shew_0702 0.36 -1.7 797,297 - Shew_0702 0.47 +0.1 797,463 - Shew_0702 0.63 -0.3 797,473 - Shew_0702 0.64 +0.7 797,677 - Shew_0702 0.82 +0.4 797,849 - -3.2 797,955 + -0.0 797,963 - +0.3 797,963 - +0.2 798,134 - Shew_0703 0.23 +2.7 798,162 + Shew_0703 0.31 +0.8 798,251 + Shew_0703 0.55 -0.5 798,373 + Shew_0703 0.89 -0.2 798,435 + -0.2 798,503 + -0.9 798,526 + -0.4 798,677 + Shew_0704 0.13 -0.5 798,701 - Shew_0704 0.17 +3.4 798,861 - Shew_0704 0.44 +0.1
Or see this region's nucleotide sequence