Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0680 and Shew_0681 are separated by 109 nucleotides Shew_0681 and Shew_0682 are separated by 75 nucleotides
Shew_0680: Shew_0680 - LysR family transcriptional regulator (RefSeq), at 774,193 to 775,065
_0680
Shew_0681: Shew_0681 - penicillin V acylase-like protein (RefSeq), at 775,175 to 776,254
_0681
Shew_0682: Shew_0682 - major facilitator superfamily permease (RefSeq), at 776,330 to 777,433
_0682
Position (kb) 775
776
777 Strain fitness (log2 ratio) -1
0
1
2 at 774.238 kb on + strand at 774.529 kb on + strand, within Shew_0680 at 774.613 kb on - strand, within Shew_0680 at 774.699 kb on + strand, within Shew_0680 at 774.755 kb on + strand, within Shew_0680 at 775.320 kb on - strand, within Shew_0681 at 775.402 kb on + strand, within Shew_0681 at 775.410 kb on - strand, within Shew_0681 at 775.450 kb on + strand, within Shew_0681 at 775.557 kb on - strand, within Shew_0681 at 775.711 kb on + strand, within Shew_0681 at 775.719 kb on - strand, within Shew_0681 at 775.779 kb on + strand, within Shew_0681 at 775.859 kb on - strand, within Shew_0681 at 775.929 kb on + strand, within Shew_0681 at 775.932 kb on - strand, within Shew_0681 at 776.042 kb on + strand, within Shew_0681 at 776.555 kb on - strand, within Shew_0682 at 776.737 kb on - strand, within Shew_0682 at 777.027 kb on - strand, within Shew_0682
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 774,238 + +0.5 774,529 + Shew_0680 0.38 +0.4 774,613 - Shew_0680 0.48 +0.2 774,699 + Shew_0680 0.58 -0.3 774,755 + Shew_0680 0.64 -0.3 775,320 - Shew_0681 0.13 -0.4 775,402 + Shew_0681 0.21 +1.0 775,410 - Shew_0681 0.22 -0.5 775,450 + Shew_0681 0.25 +0.8 775,557 - Shew_0681 0.35 +0.2 775,711 + Shew_0681 0.50 +0.3 775,719 - Shew_0681 0.50 +2.0 775,779 + Shew_0681 0.56 +0.7 775,859 - Shew_0681 0.63 -1.0 775,929 + Shew_0681 0.70 +0.6 775,932 - Shew_0681 0.70 +0.2 776,042 + Shew_0681 0.80 +2.2 776,555 - Shew_0682 0.20 -0.2 776,737 - Shew_0682 0.37 -0.3 777,027 - Shew_0682 0.63 -0.9
Or see this region's nucleotide sequence