Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0441 and Shew_0442 are separated by 133 nucleotides Shew_0442 and Shew_0443 are separated by 173 nucleotides
Shew_0441: Shew_0441 - dehydratase (RefSeq), at 491,155 to 491,994
_0441
Shew_0442: Shew_0442 - aldo/keto reductase (RefSeq), at 492,128 to 493,018
_0442
Shew_0443: Shew_0443 - formate--tetrahydrofolate ligase (RefSeq), at 493,192 to 494,886
_0443
Position (kb) 492
493
494 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4
5
6 at 491.166 kb on + strand at 491.231 kb on + strand at 491.246 kb on + strand, within Shew_0441 at 491.254 kb on - strand, within Shew_0441 at 491.254 kb on - strand, within Shew_0441 at 491.254 kb on - strand, within Shew_0441 at 491.254 kb on - strand, within Shew_0441 at 491.254 kb on - strand, within Shew_0441 at 491.292 kb on + strand, within Shew_0441 at 491.300 kb on - strand, within Shew_0441 at 491.478 kb on - strand, within Shew_0441 at 491.559 kb on + strand, within Shew_0441 at 491.566 kb on - strand, within Shew_0441 at 491.621 kb on + strand, within Shew_0441 at 491.660 kb on + strand, within Shew_0441 at 491.793 kb on + strand, within Shew_0441 at 491.843 kb on - strand, within Shew_0441 at 491.843 kb on - strand, within Shew_0441 at 492.252 kb on - strand, within Shew_0442 at 492.401 kb on + strand, within Shew_0442 at 492.409 kb on - strand, within Shew_0442 at 492.460 kb on + strand, within Shew_0442 at 492.468 kb on - strand, within Shew_0442 at 492.655 kb on + strand, within Shew_0442 at 492.751 kb on + strand, within Shew_0442 at 492.870 kb on + strand, within Shew_0442 at 493.004 kb on + strand at 493.005 kb on - strand at 493.014 kb on + strand at 493.014 kb on + strand at 493.014 kb on + strand at 493.014 kb on + strand at 493.014 kb on + strand at 493.022 kb on - strand at 493.022 kb on - strand at 493.022 kb on - strand at 493.022 kb on - strand at 493.022 kb on - strand at 493.022 kb on - strand at 493.122 kb on - strand at 493.187 kb on + strand at 493.234 kb on - strand at 493.302 kb on + strand at 493.406 kb on - strand, within Shew_0443 at 493.413 kb on - strand, within Shew_0443 at 493.415 kb on + strand, within Shew_0443 at 493.415 kb on + strand, within Shew_0443 at 493.423 kb on - strand, within Shew_0443 at 493.590 kb on + strand, within Shew_0443 at 493.774 kb on - strand, within Shew_0443 at 493.975 kb on + strand, within Shew_0443
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 491,166 + +1.0 491,231 + -1.0 491,246 + Shew_0441 0.11 -0.9 491,254 - Shew_0441 0.12 -1.1 491,254 - Shew_0441 0.12 -2.2 491,254 - Shew_0441 0.12 -1.5 491,254 - Shew_0441 0.12 +0.9 491,254 - Shew_0441 0.12 -6.1 491,292 + Shew_0441 0.16 -1.2 491,300 - Shew_0441 0.17 +0.1 491,478 - Shew_0441 0.38 -1.0 491,559 + Shew_0441 0.48 -0.9 491,566 - Shew_0441 0.49 -2.5 491,621 + Shew_0441 0.55 -1.9 491,660 + Shew_0441 0.60 +0.6 491,793 + Shew_0441 0.76 -1.1 491,843 - Shew_0441 0.82 -2.6 491,843 - Shew_0441 0.82 +1.9 492,252 - Shew_0442 0.14 +0.6 492,401 + Shew_0442 0.31 -0.7 492,409 - Shew_0442 0.32 +0.1 492,460 + Shew_0442 0.37 +0.4 492,468 - Shew_0442 0.38 +5.8 492,655 + Shew_0442 0.59 -3.8 492,751 + Shew_0442 0.70 -0.1 492,870 + Shew_0442 0.83 +0.9 493,004 + +0.7 493,005 - -0.1 493,014 + -0.8 493,014 + +0.7 493,014 + +0.0 493,014 + +0.6 493,014 + +0.9 493,022 - -0.6 493,022 - +0.4 493,022 - +0.4 493,022 - -1.4 493,022 - -0.2 493,022 - +0.5 493,122 - -3.6 493,187 + +0.1 493,234 - +2.9 493,302 + -0.1 493,406 - Shew_0443 0.13 -0.1 493,413 - Shew_0443 0.13 +0.9 493,415 + Shew_0443 0.13 +0.8 493,415 + Shew_0443 0.13 +2.2 493,423 - Shew_0443 0.14 +1.0 493,590 + Shew_0443 0.23 -0.5 493,774 - Shew_0443 0.34 -0.1 493,975 + Shew_0443 0.46 +0.9
Or see this region's nucleotide sequence