Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4144

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4143 and Dshi_4144 are separated by 117 nucleotidesDshi_4144 and Dshi_4145 are separated by 6 nucleotides Dshi_4143: Dshi_4143 - glycosyl transferase family 2 (RefSeq), at 75,619 to 76,494 _4143 Dshi_4144: Dshi_4144 - transferase hexapeptide repeat containing protein (RefSeq), at 76,612 to 77,184 _4144 Dshi_4145: Dshi_4145 - glycosyl transferase family 2 (RefSeq), at 77,191 to 78,195 _4145 Position (kb) 76 77 78Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 75.677 kb on + strandat 75.697 kb on + strandat 75.716 kb on + strand, within Dshi_4143at 75.764 kb on + strand, within Dshi_4143at 75.837 kb on + strand, within Dshi_4143at 75.862 kb on + strand, within Dshi_4143at 75.910 kb on - strand, within Dshi_4143at 76.002 kb on + strand, within Dshi_4143at 76.021 kb on + strand, within Dshi_4143at 76.099 kb on + strand, within Dshi_4143at 76.110 kb on + strand, within Dshi_4143at 76.203 kb on + strand, within Dshi_4143at 76.235 kb on - strand, within Dshi_4143at 76.306 kb on + strand, within Dshi_4143at 76.318 kb on - strand, within Dshi_4143at 76.362 kb on + strand, within Dshi_4143at 76.648 kb on - strandat 76.648 kb on - strandat 76.661 kb on - strandat 76.751 kb on - strand, within Dshi_4144at 76.825 kb on + strand, within Dshi_4144at 76.951 kb on - strand, within Dshi_4144at 76.979 kb on - strand, within Dshi_4144at 76.981 kb on + strand, within Dshi_4144at 77.045 kb on + strand, within Dshi_4144at 77.120 kb on - strand, within Dshi_4144at 77.138 kb on + strandat 77.309 kb on - strand, within Dshi_4145at 77.314 kb on - strand, within Dshi_4145at 77.359 kb on - strand, within Dshi_4145at 77.373 kb on - strand, within Dshi_4145at 77.476 kb on + strand, within Dshi_4145at 77.486 kb on + strand, within Dshi_4145at 77.502 kb on + strand, within Dshi_4145at 77.508 kb on - strand, within Dshi_4145at 77.653 kb on - strand, within Dshi_4145at 77.690 kb on - strand, within Dshi_4145at 77.698 kb on + strand, within Dshi_4145at 77.711 kb on + strand, within Dshi_4145at 77.712 kb on - strand, within Dshi_4145at 77.860 kb on - strand, within Dshi_4145at 77.889 kb on - strand, within Dshi_4145at 77.891 kb on - strand, within Dshi_4145at 78.038 kb on + strandat 78.108 kb on + strandat 78.182 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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75,677 + +3.3
75,697 + -0.8
75,716 + Dshi_4143 0.11 -2.0
75,764 + Dshi_4143 0.17 -0.3
75,837 + Dshi_4143 0.25 -2.4
75,862 + Dshi_4143 0.28 -1.0
75,910 - Dshi_4143 0.33 -1.3
76,002 + Dshi_4143 0.44 +1.0
76,021 + Dshi_4143 0.46 +0.0
76,099 + Dshi_4143 0.55 -0.3
76,110 + Dshi_4143 0.56 -1.7
76,203 + Dshi_4143 0.67 -0.3
76,235 - Dshi_4143 0.70 -2.1
76,306 + Dshi_4143 0.78 -2.4
76,318 - Dshi_4143 0.80 -3.2
76,362 + Dshi_4143 0.85 -1.9
76,648 - -2.9
76,648 - -2.8
76,661 - -0.2
76,751 - Dshi_4144 0.24 -1.0
76,825 + Dshi_4144 0.37 +0.7
76,951 - Dshi_4144 0.59 -1.3
76,979 - Dshi_4144 0.64 -0.3
76,981 + Dshi_4144 0.64 +1.0
77,045 + Dshi_4144 0.76 -0.6
77,120 - Dshi_4144 0.89 -0.7
77,138 + -1.6
77,309 - Dshi_4145 0.12 +1.1
77,314 - Dshi_4145 0.12 +1.9
77,359 - Dshi_4145 0.17 +2.0
77,373 - Dshi_4145 0.18 -1.1
77,476 + Dshi_4145 0.28 +2.0
77,486 + Dshi_4145 0.29 +0.2
77,502 + Dshi_4145 0.31 +0.3
77,508 - Dshi_4145 0.32 +0.2
77,653 - Dshi_4145 0.46 -2.2
77,690 - Dshi_4145 0.50 +1.8
77,698 + Dshi_4145 0.50 -2.4
77,711 + Dshi_4145 0.52 -0.1
77,712 - Dshi_4145 0.52 +0.1
77,860 - Dshi_4145 0.67 -0.6
77,889 - Dshi_4145 0.69 -0.1
77,891 - Dshi_4145 0.70 -1.6
78,038 + -1.0
78,108 + -1.0
78,182 + -0.8

Or see this region's nucleotide sequence