Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3793

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3792 and Dshi_3793 are separated by 82 nucleotidesDshi_3793 and Dshi_3794 are separated by 3 nucleotidesDshi_3794 and Dshi_3795 overlap by 4 nucleotides Dshi_3792: Dshi_3792 - extracellular solute-binding protein family 5 (RefSeq), at 167 to 1,822 _3792 Dshi_3793: Dshi_3793 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,905 to 2,858 _3793 Dshi_3794: Dshi_3794 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,862 to 3,749 _3794 Dshi_3795: Dshi_3795 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 3,746 to 4,741 _3795 Position (kb) 1 2 3Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 0.961 kb on - strand, within Dshi_3792at 0.965 kb on + strand, within Dshi_3792at 0.993 kb on + strand, within Dshi_3792at 1.046 kb on + strand, within Dshi_3792at 1.122 kb on + strand, within Dshi_3792at 1.316 kb on + strand, within Dshi_3792at 1.321 kb on + strand, within Dshi_3792at 1.438 kb on + strand, within Dshi_3792at 1.482 kb on + strand, within Dshi_3792at 1.558 kb on + strand, within Dshi_3792at 1.680 kb on - strandat 1.959 kb on - strandat 1.975 kb on - strandat 1.986 kb on - strandat 2.019 kb on - strand, within Dshi_3793at 2.086 kb on + strand, within Dshi_3793at 2.121 kb on + strand, within Dshi_3793at 2.121 kb on + strand, within Dshi_3793at 2.121 kb on + strand, within Dshi_3793at 2.129 kb on - strand, within Dshi_3793at 2.129 kb on - strand, within Dshi_3793at 2.301 kb on - strand, within Dshi_3793at 2.347 kb on + strand, within Dshi_3793at 2.355 kb on - strand, within Dshi_3793at 2.401 kb on + strand, within Dshi_3793at 2.409 kb on - strand, within Dshi_3793at 2.409 kb on - strand, within Dshi_3793at 2.424 kb on + strand, within Dshi_3793at 2.592 kb on + strand, within Dshi_3793at 2.600 kb on - strand, within Dshi_3793at 2.679 kb on - strand, within Dshi_3793at 2.796 kb on + strandat 3.062 kb on + strand, within Dshi_3794at 3.083 kb on + strand, within Dshi_3794at 3.253 kb on + strand, within Dshi_3794at 3.286 kb on + strand, within Dshi_3794at 3.443 kb on + strand, within Dshi_3794at 3.478 kb on + strand, within Dshi_3794at 3.483 kb on + strand, within Dshi_3794at 3.486 kb on - strand, within Dshi_3794at 3.576 kb on - strand, within Dshi_3794at 3.647 kb on + strand, within Dshi_3794at 3.647 kb on + strand, within Dshi_3794at 3.664 kb on + strandat 3.712 kb on + strandat 3.781 kb on - strandat 3.790 kb on - strandat 3.801 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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961 - Dshi_3792 0.48 -2.4
965 + Dshi_3792 0.48 -1.6
993 + Dshi_3792 0.50 +0.2
1,046 + Dshi_3792 0.53 -3.9
1,122 + Dshi_3792 0.58 +0.2
1,316 + Dshi_3792 0.69 -1.0
1,321 + Dshi_3792 0.70 -1.6
1,438 + Dshi_3792 0.77 -1.4
1,482 + Dshi_3792 0.79 +0.6
1,558 + Dshi_3792 0.84 -2.6
1,680 - +0.2
1,959 - +2.0
1,975 - +1.2
1,986 - +1.9
2,019 - Dshi_3793 0.12 -0.0
2,086 + Dshi_3793 0.19 -2.0
2,121 + Dshi_3793 0.23 +0.8
2,121 + Dshi_3793 0.23 -0.4
2,121 + Dshi_3793 0.23 +0.8
2,129 - Dshi_3793 0.23 +1.2
2,129 - Dshi_3793 0.23 +1.2
2,301 - Dshi_3793 0.42 -0.4
2,347 + Dshi_3793 0.46 -0.6
2,355 - Dshi_3793 0.47 -0.8
2,401 + Dshi_3793 0.52 -1.0
2,409 - Dshi_3793 0.53 -0.4
2,409 - Dshi_3793 0.53 -1.5
2,424 + Dshi_3793 0.54 +1.2
2,592 + Dshi_3793 0.72 +1.9
2,600 - Dshi_3793 0.73 -0.4
2,679 - Dshi_3793 0.81 +0.7
2,796 + +0.2
3,062 + Dshi_3794 0.23 +1.1
3,083 + Dshi_3794 0.25 -0.2
3,253 + Dshi_3794 0.44 -1.0
3,286 + Dshi_3794 0.48 -1.1
3,443 + Dshi_3794 0.65 -0.2
3,478 + Dshi_3794 0.69 -2.2
3,483 + Dshi_3794 0.70 -0.6
3,486 - Dshi_3794 0.70 -3.0
3,576 - Dshi_3794 0.80 -0.4
3,647 + Dshi_3794 0.88 +0.2
3,647 + Dshi_3794 0.88 -0.5
3,664 + -2.1
3,712 + -0.1
3,781 - -2.4
3,790 - +0.1
3,801 + +1.2

Or see this region's nucleotide sequence