Experiment: m.b. Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3715 and Dshi_3716 are separated by 127 nucleotides Dshi_3716 and Dshi_3717 are separated by 38 nucleotides
Dshi_3715: Dshi_3715 - transcriptional regulator, LysR family (RefSeq), at 119,636 to 120,550
_3715
Dshi_3716: Dshi_3716 - UbiD family decarboxylase (RefSeq), at 120,678 to 122,087
_3716
Dshi_3717: Dshi_3717 - aldehyde dehydrogenase (RefSeq), at 122,126 to 123,583
_3717
Position (kb)
120
121
122
123 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 119.681 kb on - strand at 119.705 kb on - strand at 119.717 kb on + strand at 119.778 kb on + strand, within Dshi_3715 at 119.778 kb on + strand, within Dshi_3715 at 119.792 kb on - strand, within Dshi_3715 at 119.792 kb on - strand, within Dshi_3715 at 119.812 kb on + strand, within Dshi_3715 at 119.858 kb on + strand, within Dshi_3715 at 119.883 kb on - strand, within Dshi_3715 at 119.903 kb on + strand, within Dshi_3715 at 119.906 kb on - strand, within Dshi_3715 at 119.906 kb on - strand, within Dshi_3715 at 119.939 kb on - strand, within Dshi_3715 at 119.953 kb on + strand, within Dshi_3715 at 119.953 kb on + strand, within Dshi_3715 at 119.953 kb on + strand, within Dshi_3715 at 119.961 kb on - strand, within Dshi_3715 at 119.961 kb on - strand, within Dshi_3715 at 119.961 kb on - strand, within Dshi_3715 at 119.961 kb on - strand, within Dshi_3715 at 119.961 kb on - strand, within Dshi_3715 at 119.961 kb on - strand, within Dshi_3715 at 120.118 kb on - strand, within Dshi_3715 at 120.163 kb on + strand, within Dshi_3715 at 120.182 kb on - strand, within Dshi_3715 at 120.266 kb on + strand, within Dshi_3715 at 120.308 kb on - strand, within Dshi_3715 at 120.377 kb on + strand, within Dshi_3715 at 120.385 kb on - strand, within Dshi_3715 at 120.391 kb on - strand, within Dshi_3715 at 120.397 kb on + strand, within Dshi_3715 at 120.397 kb on - strand, within Dshi_3715 at 120.412 kb on - strand, within Dshi_3715 at 120.415 kb on + strand, within Dshi_3715 at 120.471 kb on + strand at 120.487 kb on + strand at 120.487 kb on + strand at 120.489 kb on + strand at 120.497 kb on - strand at 120.518 kb on + strand at 120.518 kb on - strand at 120.555 kb on - strand at 120.617 kb on + strand at 120.649 kb on - strand at 120.721 kb on - strand at 120.723 kb on - strand at 120.829 kb on - strand, within Dshi_3716 at 120.840 kb on + strand, within Dshi_3716 at 120.848 kb on - strand, within Dshi_3716 at 120.883 kb on + strand, within Dshi_3716 at 120.886 kb on - strand, within Dshi_3716 at 120.891 kb on - strand, within Dshi_3716 at 120.923 kb on - strand, within Dshi_3716 at 120.947 kb on + strand, within Dshi_3716 at 120.995 kb on + strand, within Dshi_3716 at 120.995 kb on + strand, within Dshi_3716 at 121.012 kb on + strand, within Dshi_3716 at 121.020 kb on - strand, within Dshi_3716 at 121.044 kb on - strand, within Dshi_3716 at 121.044 kb on - strand, within Dshi_3716 at 121.090 kb on - strand, within Dshi_3716 at 121.137 kb on + strand, within Dshi_3716 at 121.143 kb on - strand, within Dshi_3716 at 121.148 kb on - strand, within Dshi_3716 at 121.162 kb on + strand, within Dshi_3716 at 121.162 kb on + strand, within Dshi_3716 at 121.162 kb on + strand, within Dshi_3716 at 121.164 kb on + strand, within Dshi_3716 at 121.170 kb on - strand, within Dshi_3716 at 121.194 kb on - strand, within Dshi_3716 at 121.254 kb on + strand, within Dshi_3716 at 121.262 kb on - strand, within Dshi_3716 at 121.369 kb on + strand, within Dshi_3716 at 121.393 kb on + strand, within Dshi_3716 at 121.403 kb on + strand, within Dshi_3716 at 121.411 kb on - strand, within Dshi_3716 at 121.411 kb on - strand, within Dshi_3716 at 121.447 kb on + strand, within Dshi_3716 at 121.447 kb on + strand, within Dshi_3716 at 121.463 kb on + strand, within Dshi_3716 at 121.527 kb on + strand, within Dshi_3716 at 121.535 kb on - strand, within Dshi_3716 at 121.537 kb on - strand, within Dshi_3716 at 121.562 kb on + strand, within Dshi_3716 at 121.570 kb on - strand, within Dshi_3716 at 121.570 kb on - strand, within Dshi_3716 at 121.593 kb on - strand, within Dshi_3716 at 121.649 kb on - strand, within Dshi_3716 at 121.681 kb on + strand, within Dshi_3716 at 121.682 kb on - strand, within Dshi_3716 at 121.726 kb on - strand, within Dshi_3716 at 121.746 kb on + strand, within Dshi_3716 at 121.776 kb on + strand, within Dshi_3716 at 121.853 kb on + strand, within Dshi_3716 at 121.862 kb on + strand, within Dshi_3716 at 121.862 kb on + strand, within Dshi_3716 at 121.870 kb on - strand, within Dshi_3716 at 121.870 kb on - strand, within Dshi_3716 at 121.870 kb on - strand, within Dshi_3716 at 121.896 kb on + strand, within Dshi_3716 at 121.906 kb on + strand, within Dshi_3716 at 121.912 kb on + strand, within Dshi_3716 at 121.914 kb on - strand, within Dshi_3716 at 121.944 kb on + strand, within Dshi_3716 at 121.958 kb on + strand at 121.958 kb on + strand at 122.050 kb on + strand at 122.071 kb on + strand at 122.110 kb on + strand at 122.117 kb on - strand at 122.133 kb on + strand at 122.174 kb on - strand at 122.180 kb on - strand at 122.225 kb on - strand at 122.233 kb on + strand at 122.233 kb on + strand at 122.233 kb on + strand at 122.241 kb on - strand at 122.252 kb on + strand at 122.252 kb on + strand at 122.255 kb on - strand at 122.257 kb on + strand at 122.257 kb on + strand at 122.295 kb on + strand, within Dshi_3717 at 122.320 kb on - strand, within Dshi_3717 at 122.339 kb on + strand, within Dshi_3717 at 122.344 kb on + strand, within Dshi_3717 at 122.352 kb on - strand, within Dshi_3717 at 122.367 kb on - strand, within Dshi_3717 at 122.399 kb on - strand, within Dshi_3717 at 122.469 kb on + strand, within Dshi_3717 at 122.469 kb on + strand, within Dshi_3717 at 122.474 kb on + strand, within Dshi_3717 at 122.474 kb on + strand, within Dshi_3717 at 122.474 kb on + strand, within Dshi_3717 at 122.474 kb on + strand, within Dshi_3717 at 122.474 kb on + strand, within Dshi_3717 at 122.482 kb on - strand, within Dshi_3717 at 122.482 kb on - strand, within Dshi_3717 at 122.594 kb on + strand, within Dshi_3717 at 122.679 kb on - strand, within Dshi_3717 at 122.683 kb on + strand, within Dshi_3717 at 122.698 kb on + strand, within Dshi_3717 at 122.918 kb on + strand, within Dshi_3717 at 122.972 kb on + strand, within Dshi_3717 at 122.974 kb on + strand, within Dshi_3717 at 122.982 kb on - strand, within Dshi_3717 at 123.049 kb on + strand, within Dshi_3717 at 123.067 kb on - strand, within Dshi_3717
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml remove 119,681 - -1.3 119,705 - -0.5 119,717 + -1.5 119,778 + Dshi_3715 0.16 -0.9 119,778 + Dshi_3715 0.16 -2.4 119,792 - Dshi_3715 0.17 -2.9 119,792 - Dshi_3715 0.17 -1.9 119,812 + Dshi_3715 0.19 -0.3 119,858 + Dshi_3715 0.24 -0.7 119,883 - Dshi_3715 0.27 +0.9 119,903 + Dshi_3715 0.29 -3.1 119,906 - Dshi_3715 0.30 -0.5 119,906 - Dshi_3715 0.30 -1.9 119,939 - Dshi_3715 0.33 +0.8 119,953 + Dshi_3715 0.35 -0.8 119,953 + Dshi_3715 0.35 -0.8 119,953 + Dshi_3715 0.35 +1.5 119,961 - Dshi_3715 0.36 -4.2 119,961 - Dshi_3715 0.36 +0.7 119,961 - Dshi_3715 0.36 -1.3 119,961 - Dshi_3715 0.36 -2.1 119,961 - Dshi_3715 0.36 +1.6 119,961 - Dshi_3715 0.36 -1.3 120,118 - Dshi_3715 0.53 +0.4 120,163 + Dshi_3715 0.58 +0.5 120,182 - Dshi_3715 0.60 +1.6 120,266 + Dshi_3715 0.69 -1.2 120,308 - Dshi_3715 0.73 -1.8 120,377 + Dshi_3715 0.81 -0.0 120,385 - Dshi_3715 0.82 +0.3 120,391 - Dshi_3715 0.83 -1.5 120,397 + Dshi_3715 0.83 -1.3 120,397 - Dshi_3715 0.83 -1.1 120,412 - Dshi_3715 0.85 -0.8 120,415 + Dshi_3715 0.85 -1.0 120,471 + -2.4 120,487 + -0.9 120,487 + -2.3 120,489 + -0.1 120,497 - +0.3 120,518 + +1.1 120,518 - -3.3 120,555 - +0.8 120,617 + -0.6 120,649 - +0.2 120,721 - -0.4 120,723 - -1.8 120,829 - Dshi_3716 0.11 -2.1 120,840 + Dshi_3716 0.11 +1.3 120,848 - Dshi_3716 0.12 -0.4 120,883 + Dshi_3716 0.15 -1.1 120,886 - Dshi_3716 0.15 -3.3 120,891 - Dshi_3716 0.15 +0.9 120,923 - Dshi_3716 0.17 +0.7 120,947 + Dshi_3716 0.19 +0.0 120,995 + Dshi_3716 0.22 -4.4 120,995 + Dshi_3716 0.22 -0.0 121,012 + Dshi_3716 0.24 +1.4 121,020 - Dshi_3716 0.24 +0.6 121,044 - Dshi_3716 0.26 -0.6 121,044 - Dshi_3716 0.26 -4.0 121,090 - Dshi_3716 0.29 -2.7 121,137 + Dshi_3716 0.33 -0.5 121,143 - Dshi_3716 0.33 +0.1 121,148 - Dshi_3716 0.33 -1.3 121,162 + Dshi_3716 0.34 -2.3 121,162 + Dshi_3716 0.34 -0.3 121,162 + Dshi_3716 0.34 +0.3 121,164 + Dshi_3716 0.34 -1.3 121,170 - Dshi_3716 0.35 -4.1 121,194 - Dshi_3716 0.37 +1.7 121,254 + Dshi_3716 0.41 +0.9 121,262 - Dshi_3716 0.41 -2.3 121,369 + Dshi_3716 0.49 -0.9 121,393 + Dshi_3716 0.51 +1.9 121,403 + Dshi_3716 0.51 -1.6 121,411 - Dshi_3716 0.52 +0.3 121,411 - Dshi_3716 0.52 +3.4 121,447 + Dshi_3716 0.55 +0.9 121,447 + Dshi_3716 0.55 +0.1 121,463 + Dshi_3716 0.56 +0.1 121,527 + Dshi_3716 0.60 -3.2 121,535 - Dshi_3716 0.61 +0.3 121,537 - Dshi_3716 0.61 +0.1 121,562 + Dshi_3716 0.63 -0.7 121,570 - Dshi_3716 0.63 +0.0 121,570 - Dshi_3716 0.63 -1.1 121,593 - Dshi_3716 0.65 -0.1 121,649 - Dshi_3716 0.69 -1.1 121,681 + Dshi_3716 0.71 +0.9 121,682 - Dshi_3716 0.71 -0.7 121,726 - Dshi_3716 0.74 -1.1 121,746 + Dshi_3716 0.76 -0.8 121,776 + Dshi_3716 0.78 +3.4 121,853 + Dshi_3716 0.83 +0.5 121,862 + Dshi_3716 0.84 +4.1 121,862 + Dshi_3716 0.84 -0.3 121,870 - Dshi_3716 0.85 -3.1 121,870 - Dshi_3716 0.85 -0.5 121,870 - Dshi_3716 0.85 -0.2 121,896 + Dshi_3716 0.86 +2.3 121,906 + Dshi_3716 0.87 +0.0 121,912 + Dshi_3716 0.88 +1.9 121,914 - Dshi_3716 0.88 +1.6 121,944 + Dshi_3716 0.90 +0.6 121,958 + -0.9 121,958 + -3.8 122,050 + -0.1 122,071 + -0.7 122,110 + +0.3 122,117 - -2.3 122,133 + +1.3 122,174 - -0.3 122,180 - -0.6 122,225 - -0.7 122,233 + +0.5 122,233 + +0.3 122,233 + -0.7 122,241 - -0.2 122,252 + +2.0 122,252 + -0.6 122,255 - +2.7 122,257 + -0.5 122,257 + -0.7 122,295 + Dshi_3717 0.12 -0.3 122,320 - Dshi_3717 0.13 -0.2 122,339 + Dshi_3717 0.15 +0.3 122,344 + Dshi_3717 0.15 -0.9 122,352 - Dshi_3717 0.16 +0.8 122,367 - Dshi_3717 0.17 -0.5 122,399 - Dshi_3717 0.19 -3.7 122,469 + Dshi_3717 0.24 +0.2 122,469 + Dshi_3717 0.24 -0.3 122,474 + Dshi_3717 0.24 -0.4 122,474 + Dshi_3717 0.24 -1.1 122,474 + Dshi_3717 0.24 -2.4 122,474 + Dshi_3717 0.24 -0.3 122,474 + Dshi_3717 0.24 +0.9 122,482 - Dshi_3717 0.24 -1.2 122,482 - Dshi_3717 0.24 +0.0 122,594 + Dshi_3717 0.32 +0.3 122,679 - Dshi_3717 0.38 -2.2 122,683 + Dshi_3717 0.38 -1.3 122,698 + Dshi_3717 0.39 -1.0 122,918 + Dshi_3717 0.54 -0.4 122,972 + Dshi_3717 0.58 -1.9 122,974 + Dshi_3717 0.58 -1.1 122,982 - Dshi_3717 0.59 -1.5 123,049 + Dshi_3717 0.63 -1.0 123,067 - Dshi_3717 0.65 -0.9
Or see this region's nucleotide sequence