Experiment: m.b. Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3712 and Dshi_3713 are separated by 183 nucleotides Dshi_3713 and Dshi_3714 overlap by 20 nucleotides Dshi_3714 and Dshi_3715 are separated by 116 nucleotides
Dshi_3712: Dshi_3712 - short-chain dehydrogenase/reductase SDR (RefSeq), at 117,527 to 118,285
_3712
Dshi_3713: Dshi_3713 - hypothetical protein (RefSeq), at 118,469 to 118,945
_3713
Dshi_3714: Dshi_3714 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (RefSeq), at 118,926 to 119,519
_3714
Dshi_3715: Dshi_3715 - transcriptional regulator, LysR family (RefSeq), at 119,636 to 120,550
_3715
Position (kb)
118
119
120 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 117.926 kb on - strand, within Dshi_3712 at 117.926 kb on - strand, within Dshi_3712 at 117.933 kb on + strand, within Dshi_3712 at 117.934 kb on - strand, within Dshi_3712 at 117.980 kb on - strand, within Dshi_3712 at 117.999 kb on - strand, within Dshi_3712 at 118.007 kb on + strand, within Dshi_3712 at 118.008 kb on + strand, within Dshi_3712 at 118.008 kb on + strand, within Dshi_3712 at 118.008 kb on + strand, within Dshi_3712 at 118.008 kb on + strand, within Dshi_3712 at 118.015 kb on - strand, within Dshi_3712 at 118.016 kb on - strand, within Dshi_3712 at 118.016 kb on - strand, within Dshi_3712 at 118.016 kb on - strand, within Dshi_3712 at 118.068 kb on - strand, within Dshi_3712 at 118.102 kb on + strand, within Dshi_3712 at 118.111 kb on + strand, within Dshi_3712 at 118.125 kb on + strand, within Dshi_3712 at 118.133 kb on - strand, within Dshi_3712 at 118.133 kb on - strand, within Dshi_3712 at 118.133 kb on - strand, within Dshi_3712 at 118.135 kb on + strand, within Dshi_3712 at 118.143 kb on - strand, within Dshi_3712 at 118.152 kb on + strand, within Dshi_3712 at 118.160 kb on - strand, within Dshi_3712 at 118.196 kb on + strand, within Dshi_3712 at 118.202 kb on + strand, within Dshi_3712 at 118.211 kb on + strand at 118.213 kb on + strand at 118.216 kb on + strand at 118.219 kb on - strand at 118.235 kb on + strand at 118.235 kb on + strand at 118.235 kb on + strand at 118.235 kb on + strand at 118.235 kb on + strand at 118.235 kb on + strand at 118.235 kb on + strand at 118.243 kb on - strand at 118.243 kb on - strand at 118.254 kb on - strand at 118.256 kb on - strand at 118.339 kb on - strand at 118.414 kb on - strand at 118.428 kb on + strand at 118.436 kb on - strand at 118.446 kb on - strand at 118.450 kb on - strand at 118.463 kb on + strand at 118.463 kb on + strand at 118.473 kb on - strand at 118.495 kb on - strand at 118.506 kb on + strand at 118.549 kb on + strand, within Dshi_3713 at 118.565 kb on + strand, within Dshi_3713 at 118.565 kb on + strand, within Dshi_3713 at 118.565 kb on + strand, within Dshi_3713 at 118.572 kb on + strand, within Dshi_3713 at 118.573 kb on - strand, within Dshi_3713 at 118.573 kb on - strand, within Dshi_3713 at 118.573 kb on - strand, within Dshi_3713 at 118.614 kb on + strand, within Dshi_3713 at 118.662 kb on + strand, within Dshi_3713 at 118.666 kb on + strand, within Dshi_3713 at 118.676 kb on - strand, within Dshi_3713 at 118.704 kb on + strand, within Dshi_3713 at 118.729 kb on - strand, within Dshi_3713 at 118.729 kb on - strand, within Dshi_3713 at 118.760 kb on + strand, within Dshi_3713 at 118.768 kb on - strand, within Dshi_3713 at 118.793 kb on + strand, within Dshi_3713 at 118.793 kb on + strand, within Dshi_3713 at 118.798 kb on + strand, within Dshi_3713 at 118.816 kb on + strand, within Dshi_3713 at 118.903 kb on - strand at 118.903 kb on - strand at 118.903 kb on - strand at 118.910 kb on + strand at 118.910 kb on + strand at 119.040 kb on + strand, within Dshi_3714 at 119.058 kb on + strand, within Dshi_3714 at 119.099 kb on + strand, within Dshi_3714 at 119.120 kb on + strand, within Dshi_3714 at 119.153 kb on + strand, within Dshi_3714 at 119.196 kb on + strand, within Dshi_3714 at 119.218 kb on - strand, within Dshi_3714 at 119.219 kb on - strand, within Dshi_3714 at 119.302 kb on + strand, within Dshi_3714 at 119.312 kb on + strand, within Dshi_3714 at 119.313 kb on - strand, within Dshi_3714 at 119.318 kb on - strand, within Dshi_3714 at 119.320 kb on - strand, within Dshi_3714 at 119.457 kb on + strand, within Dshi_3714 at 119.468 kb on + strand at 119.476 kb on + strand at 119.532 kb on - strand at 119.540 kb on - strand at 119.540 kb on - strand at 119.543 kb on + strand at 119.543 kb on + strand at 119.543 kb on + strand at 119.551 kb on - strand at 119.558 kb on + strand at 119.558 kb on + strand at 119.558 kb on + strand at 119.566 kb on - strand at 119.566 kb on - strand at 119.566 kb on - strand at 119.681 kb on - strand at 119.705 kb on - strand at 119.717 kb on + strand at 119.778 kb on + strand, within Dshi_3715 at 119.778 kb on + strand, within Dshi_3715 at 119.792 kb on - strand, within Dshi_3715 at 119.792 kb on - strand, within Dshi_3715 at 119.812 kb on + strand, within Dshi_3715 at 119.858 kb on + strand, within Dshi_3715 at 119.883 kb on - strand, within Dshi_3715 at 119.903 kb on + strand, within Dshi_3715 at 119.906 kb on - strand, within Dshi_3715 at 119.906 kb on - strand, within Dshi_3715 at 119.939 kb on - strand, within Dshi_3715 at 119.953 kb on + strand, within Dshi_3715 at 119.953 kb on + strand, within Dshi_3715 at 119.953 kb on + strand, within Dshi_3715 at 119.961 kb on - strand, within Dshi_3715 at 119.961 kb on - strand, within Dshi_3715 at 119.961 kb on - strand, within Dshi_3715 at 119.961 kb on - strand, within Dshi_3715 at 119.961 kb on - strand, within Dshi_3715 at 119.961 kb on - strand, within Dshi_3715 at 120.118 kb on - strand, within Dshi_3715 at 120.163 kb on + strand, within Dshi_3715 at 120.182 kb on - strand, within Dshi_3715 at 120.266 kb on + strand, within Dshi_3715 at 120.308 kb on - strand, within Dshi_3715 at 120.377 kb on + strand, within Dshi_3715 at 120.385 kb on - strand, within Dshi_3715 at 120.391 kb on - strand, within Dshi_3715 at 120.397 kb on + strand, within Dshi_3715 at 120.397 kb on - strand, within Dshi_3715 at 120.412 kb on - strand, within Dshi_3715 at 120.415 kb on + strand, within Dshi_3715 at 120.471 kb on + strand at 120.487 kb on + strand at 120.487 kb on + strand at 120.489 kb on + strand at 120.497 kb on - strand at 120.518 kb on + strand at 120.518 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml remove 117,926 - Dshi_3712 0.53 +3.3 117,926 - Dshi_3712 0.53 +1.7 117,933 + Dshi_3712 0.53 +0.3 117,934 - Dshi_3712 0.54 -3.7 117,980 - Dshi_3712 0.60 -1.3 117,999 - Dshi_3712 0.62 +0.5 118,007 + Dshi_3712 0.63 +0.0 118,008 + Dshi_3712 0.63 -1.2 118,008 + Dshi_3712 0.63 -0.4 118,008 + Dshi_3712 0.63 -0.6 118,008 + Dshi_3712 0.63 +0.9 118,015 - Dshi_3712 0.64 -1.1 118,016 - Dshi_3712 0.64 -0.8 118,016 - Dshi_3712 0.64 -1.3 118,016 - Dshi_3712 0.64 -1.0 118,068 - Dshi_3712 0.71 -2.8 118,102 + Dshi_3712 0.76 -0.6 118,111 + Dshi_3712 0.77 -1.3 118,125 + Dshi_3712 0.79 +1.9 118,133 - Dshi_3712 0.80 -1.7 118,133 - Dshi_3712 0.80 +0.3 118,133 - Dshi_3712 0.80 +1.7 118,135 + Dshi_3712 0.80 -0.3 118,143 - Dshi_3712 0.81 +0.3 118,152 + Dshi_3712 0.82 -0.1 118,160 - Dshi_3712 0.83 +0.1 118,196 + Dshi_3712 0.88 -1.9 118,202 + Dshi_3712 0.89 +0.9 118,211 + +0.9 118,213 + +2.3 118,216 + +0.5 118,219 - -3.4 118,235 + +0.8 118,235 + +0.1 118,235 + +1.7 118,235 + +0.6 118,235 + +0.3 118,235 + -1.7 118,235 + -1.5 118,243 - +0.3 118,243 - +2.3 118,254 - -0.3 118,256 - +0.9 118,339 - +0.8 118,414 - +2.1 118,428 + +1.2 118,436 - +0.1 118,446 - +1.1 118,450 - +1.9 118,463 + -1.2 118,463 + +1.5 118,473 - +1.5 118,495 - -1.0 118,506 + -1.3 118,549 + Dshi_3713 0.17 -0.7 118,565 + Dshi_3713 0.20 +0.0 118,565 + Dshi_3713 0.20 +2.3 118,565 + Dshi_3713 0.20 -1.1 118,572 + Dshi_3713 0.22 -0.4 118,573 - Dshi_3713 0.22 -0.9 118,573 - Dshi_3713 0.22 -0.6 118,573 - Dshi_3713 0.22 -0.7 118,614 + Dshi_3713 0.30 -1.6 118,662 + Dshi_3713 0.40 -0.9 118,666 + Dshi_3713 0.41 -3.2 118,676 - Dshi_3713 0.43 +1.3 118,704 + Dshi_3713 0.49 +3.4 118,729 - Dshi_3713 0.55 -1.0 118,729 - Dshi_3713 0.55 -2.9 118,760 + Dshi_3713 0.61 -0.3 118,768 - Dshi_3713 0.63 -0.3 118,793 + Dshi_3713 0.68 +0.9 118,793 + Dshi_3713 0.68 +2.3 118,798 + Dshi_3713 0.69 -0.4 118,816 + Dshi_3713 0.73 +0.9 118,903 - -0.3 118,903 - +0.0 118,903 - -1.1 118,910 + -1.1 118,910 + +2.6 119,040 + Dshi_3714 0.19 +0.2 119,058 + Dshi_3714 0.22 -3.0 119,099 + Dshi_3714 0.29 +1.2 119,120 + Dshi_3714 0.33 -0.2 119,153 + Dshi_3714 0.38 +0.6 119,196 + Dshi_3714 0.45 -0.4 119,218 - Dshi_3714 0.49 +0.8 119,219 - Dshi_3714 0.49 -0.9 119,302 + Dshi_3714 0.63 +0.5 119,312 + Dshi_3714 0.65 -0.4 119,313 - Dshi_3714 0.65 +0.2 119,318 - Dshi_3714 0.66 -0.7 119,320 - Dshi_3714 0.66 +0.3 119,457 + Dshi_3714 0.89 +2.1 119,468 + -0.7 119,476 + -0.4 119,532 - +1.3 119,540 - -0.5 119,540 - -3.9 119,543 + -3.4 119,543 + -2.1 119,543 + -2.9 119,551 - -0.4 119,558 + -2.9 119,558 + +2.5 119,558 + -0.7 119,566 - -0.7 119,566 - +2.0 119,566 - -0.1 119,681 - -1.3 119,705 - -0.5 119,717 + -1.5 119,778 + Dshi_3715 0.16 -0.9 119,778 + Dshi_3715 0.16 -2.4 119,792 - Dshi_3715 0.17 -2.9 119,792 - Dshi_3715 0.17 -1.9 119,812 + Dshi_3715 0.19 -0.3 119,858 + Dshi_3715 0.24 -0.7 119,883 - Dshi_3715 0.27 +0.9 119,903 + Dshi_3715 0.29 -3.1 119,906 - Dshi_3715 0.30 -0.5 119,906 - Dshi_3715 0.30 -1.9 119,939 - Dshi_3715 0.33 +0.8 119,953 + Dshi_3715 0.35 -0.8 119,953 + Dshi_3715 0.35 -0.8 119,953 + Dshi_3715 0.35 +1.5 119,961 - Dshi_3715 0.36 -4.2 119,961 - Dshi_3715 0.36 +0.7 119,961 - Dshi_3715 0.36 -1.3 119,961 - Dshi_3715 0.36 -2.1 119,961 - Dshi_3715 0.36 +1.6 119,961 - Dshi_3715 0.36 -1.3 120,118 - Dshi_3715 0.53 +0.4 120,163 + Dshi_3715 0.58 +0.5 120,182 - Dshi_3715 0.60 +1.6 120,266 + Dshi_3715 0.69 -1.2 120,308 - Dshi_3715 0.73 -1.8 120,377 + Dshi_3715 0.81 -0.0 120,385 - Dshi_3715 0.82 +0.3 120,391 - Dshi_3715 0.83 -1.5 120,397 + Dshi_3715 0.83 -1.3 120,397 - Dshi_3715 0.83 -1.1 120,412 - Dshi_3715 0.85 -0.8 120,415 + Dshi_3715 0.85 -1.0 120,471 + -2.4 120,487 + -0.9 120,487 + -2.3 120,489 + -0.1 120,497 - +0.3 120,518 + +1.1 120,518 - -3.3
Or see this region's nucleotide sequence