Experiment: m.b. Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3587 and Dshi_3588 are separated by 3 nucleotides Dshi_3588 and Dshi_3589 are separated by 9 nucleotides Dshi_3589 and Dshi_R0052 are separated by 42 nucleotides Dshi_R0052 and Dshi_3590 are separated by 275 nucleotides
Dshi_3587: Dshi_3587 - hypothetical protein (RefSeq), at 3,777,425 to 3,778,027
_3587
Dshi_3588: Dshi_3588 - KpsF/GutQ family protein (RefSeq), at 3,778,031 to 3,778,993
_3588
Dshi_3589: Dshi_3589 - 3'-5' exonuclease (RefSeq), at 3,779,003 to 3,779,614
_3589
Dshi_R0052: Dshi_R0052 - tRNA-Leu (RefSeq), at 3,779,657 to 3,779,743
_R0052
Dshi_3590: Dshi_3590 - NADH dehydrogenase (ubiquinone) (RefSeq), at 3,780,019 to 3,781,002
_3590
Position (kb)
3779
3780 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3779.785 kb on + strand at 3779.896 kb on + strand at 3779.897 kb on + strand at 3780.039 kb on + strand at 3780.132 kb on + strand, within Dshi_3590 at 3780.144 kb on - strand, within Dshi_3590 at 3780.208 kb on + strand, within Dshi_3590 at 3780.211 kb on - strand, within Dshi_3590 at 3780.213 kb on + strand, within Dshi_3590 at 3780.316 kb on - strand, within Dshi_3590 at 3780.331 kb on + strand, within Dshi_3590 at 3780.408 kb on + strand, within Dshi_3590 at 3780.533 kb on + strand, within Dshi_3590
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml remove 3,779,785 + +0.1 3,779,896 + -0.9 3,779,897 + +1.3 3,780,039 + -0.7 3,780,132 + Dshi_3590 0.11 -1.9 3,780,144 - Dshi_3590 0.13 -0.6 3,780,208 + Dshi_3590 0.19 -0.6 3,780,211 - Dshi_3590 0.20 -1.4 3,780,213 + Dshi_3590 0.20 +2.6 3,780,316 - Dshi_3590 0.30 +0.7 3,780,331 + Dshi_3590 0.32 -2.3 3,780,408 + Dshi_3590 0.40 -2.3 3,780,533 + Dshi_3590 0.52 -2.1
Or see this region's nucleotide sequence