Experiment: m.b. Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2925 and Dshi_2926 are separated by 120 nucleotides Dshi_2926 and Dshi_2927 are separated by 49 nucleotides Dshi_2927 and Dshi_2928 overlap by 4 nucleotides Dshi_2928 and Dshi_2929 overlap by 34 nucleotides
Dshi_2925: Dshi_2925 - HAD-superfamily subfamily IIA hydrolase like protein (RefSeq), at 3,084,036 to 3,084,908
_2925
Dshi_2926: Dshi_2926 - MaoC domain protein dehydratase (RefSeq), at 3,085,029 to 3,085,472
_2926
Dshi_2927: Dshi_2927 - riboflavin biosynthesis protein RibF (RefSeq), at 3,085,522 to 3,086,475
_2927
Dshi_2928: Dshi_2928 - protein of unknown function UPF0153 (RefSeq), at 3,086,472 to 3,086,963
_2928
Dshi_2929: Dshi_2929 - alpha/beta hydrolase fold (RefSeq), at 3,086,930 to 3,087,763
_2929
Position (kb)
3085
3086
3087 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3084.567 kb on + strand, within Dshi_2925 at 3084.578 kb on + strand, within Dshi_2925 at 3084.578 kb on + strand, within Dshi_2925 at 3084.599 kb on + strand, within Dshi_2925 at 3084.694 kb on - strand, within Dshi_2925 at 3084.710 kb on - strand, within Dshi_2925 at 3084.765 kb on - strand, within Dshi_2925 at 3085.147 kb on - strand, within Dshi_2926 at 3085.269 kb on + strand, within Dshi_2926 at 3085.440 kb on - strand at 3085.445 kb on - strand at 3085.481 kb on - strand at 3086.634 kb on - strand, within Dshi_2928 at 3086.645 kb on - strand, within Dshi_2928 at 3086.965 kb on - strand at 3087.011 kb on + strand at 3087.019 kb on - strand, within Dshi_2929 at 3087.019 kb on - strand, within Dshi_2929 at 3087.057 kb on - strand, within Dshi_2929 at 3087.135 kb on - strand, within Dshi_2929 at 3087.321 kb on - strand, within Dshi_2929 at 3087.432 kb on - strand, within Dshi_2929
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml remove 3,084,567 + Dshi_2925 0.61 +1.4 3,084,578 + Dshi_2925 0.62 +1.6 3,084,578 + Dshi_2925 0.62 -0.6 3,084,599 + Dshi_2925 0.64 -1.9 3,084,694 - Dshi_2925 0.75 +0.3 3,084,710 - Dshi_2925 0.77 -0.3 3,084,765 - Dshi_2925 0.84 -2.2 3,085,147 - Dshi_2926 0.27 -0.4 3,085,269 + Dshi_2926 0.54 -1.9 3,085,440 - -2.8 3,085,445 - -1.4 3,085,481 - -2.4 3,086,634 - Dshi_2928 0.33 +2.5 3,086,645 - Dshi_2928 0.35 +0.3 3,086,965 - +3.9 3,087,011 + +0.9 3,087,019 - Dshi_2929 0.11 -0.4 3,087,019 - Dshi_2929 0.11 +0.4 3,087,057 - Dshi_2929 0.15 +0.0 3,087,135 - Dshi_2929 0.25 -0.5 3,087,321 - Dshi_2929 0.47 +2.3 3,087,432 - Dshi_2929 0.60 +1.9
Or see this region's nucleotide sequence