Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2842

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2840 and Dshi_2841 overlap by 4 nucleotidesDshi_2841 and Dshi_2842 are separated by 181 nucleotidesDshi_2842 and Dshi_2843 are separated by 23 nucleotides Dshi_2840: Dshi_2840 - peptidase M22 glycoprotease (RefSeq), at 2,997,915 to 2,998,571 _2840 Dshi_2841: Dshi_2841 - ribosomal-protein-alanine acetyltransferase (RefSeq), at 2,998,568 to 2,998,987 _2841 Dshi_2842: Dshi_2842 - basic membrane lipoprotein (RefSeq), at 2,999,169 to 3,000,158 _2842 Dshi_2843: Dshi_2843 - ABC transporter related (RefSeq), at 3,000,182 to 3,001,828 _2843 Position (kb) 2999 3000 3001Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2998.621 kb on + strand, within Dshi_2841at 2998.792 kb on - strand, within Dshi_2841at 2998.821 kb on - strand, within Dshi_2841at 2998.874 kb on + strand, within Dshi_2841at 2998.874 kb on + strand, within Dshi_2841at 2998.898 kb on - strand, within Dshi_2841at 2999.083 kb on - strandat 2999.125 kb on + strandat 2999.242 kb on - strandat 2999.320 kb on - strand, within Dshi_2842at 2999.493 kb on + strand, within Dshi_2842at 2999.752 kb on - strand, within Dshi_2842at 3000.089 kb on + strandat 3000.117 kb on + strandat 3000.209 kb on + strandat 3000.368 kb on + strand, within Dshi_2843at 3000.390 kb on - strand, within Dshi_2843at 3000.560 kb on + strand, within Dshi_2843at 3000.579 kb on - strand, within Dshi_2843at 3000.655 kb on + strand, within Dshi_2843at 3000.871 kb on + strand, within Dshi_2843at 3000.935 kb on - strand, within Dshi_2843at 3000.965 kb on + strand, within Dshi_2843at 3001.060 kb on + strand, within Dshi_2843at 3001.060 kb on + strand, within Dshi_2843at 3001.060 kb on + strand, within Dshi_2843at 3001.089 kb on - strand, within Dshi_2843at 3001.097 kb on + strand, within Dshi_2843

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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2,998,621 + Dshi_2841 0.13 +0.7
2,998,792 - Dshi_2841 0.53 +1.0
2,998,821 - Dshi_2841 0.60 -0.0
2,998,874 + Dshi_2841 0.73 -1.0
2,998,874 + Dshi_2841 0.73 +0.0
2,998,898 - Dshi_2841 0.79 +2.6
2,999,083 - -1.0
2,999,125 + -2.0
2,999,242 - +1.0
2,999,320 - Dshi_2842 0.15 -0.3
2,999,493 + Dshi_2842 0.33 -1.4
2,999,752 - Dshi_2842 0.59 -1.1
3,000,089 + -3.6
3,000,117 + +0.4
3,000,209 + +0.1
3,000,368 + Dshi_2843 0.11 -0.5
3,000,390 - Dshi_2843 0.13 -0.5
3,000,560 + Dshi_2843 0.23 +3.0
3,000,579 - Dshi_2843 0.24 -0.9
3,000,655 + Dshi_2843 0.29 +1.0
3,000,871 + Dshi_2843 0.42 -0.0
3,000,935 - Dshi_2843 0.46 -2.4
3,000,965 + Dshi_2843 0.48 +1.0
3,001,060 + Dshi_2843 0.53 -0.8
3,001,060 + Dshi_2843 0.53 +1.5
3,001,060 + Dshi_2843 0.53 +1.0
3,001,089 - Dshi_2843 0.55 +1.0
3,001,097 + Dshi_2843 0.56 +1.4

Or see this region's nucleotide sequence