Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2804

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2803 and Dshi_2804 are separated by 134 nucleotidesDshi_2804 and Dshi_2805 are separated by 49 nucleotidesDshi_2805 and Dshi_2806 are separated by 18 nucleotidesDshi_2806 and Dshi_2807 are separated by 35 nucleotides Dshi_2803: Dshi_2803 - 5'-Nucleotidase domain protein (RefSeq), at 2,961,826 to 2,963,520 _2803 Dshi_2804: Dshi_2804 - diheme cytochrome c SoxA (RefSeq), at 2,963,655 to 2,964,509 _2804 Dshi_2805: Dshi_2805 - Sulphur oxidation protein SoxZ (RefSeq), at 2,964,559 to 2,964,888 _2805 Dshi_2806: Dshi_2806 - sulfur oxidation protein SoxY (RefSeq), at 2,964,907 to 2,965,323 _2806 Dshi_2807: Dshi_2807 - monoheme cytochrome c SoxX (RefSeq), at 2,965,359 to 2,965,841 _2807 Position (kb) 2963 2964 2965Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8 9at 2962.660 kb on - strand, within Dshi_2803at 2962.803 kb on + strand, within Dshi_2803at 2963.050 kb on - strand, within Dshi_2803at 2963.075 kb on - strand, within Dshi_2803at 2963.131 kb on - strand, within Dshi_2803at 2963.170 kb on + strand, within Dshi_2803at 2963.178 kb on - strand, within Dshi_2803at 2963.200 kb on + strand, within Dshi_2803at 2963.234 kb on + strand, within Dshi_2803at 2963.234 kb on + strand, within Dshi_2803at 2963.341 kb on - strand, within Dshi_2803at 2963.341 kb on - strand, within Dshi_2803at 2963.341 kb on - strand, within Dshi_2803at 2963.370 kb on + strandat 2963.410 kb on - strandat 2963.422 kb on - strandat 2963.444 kb on + strandat 2963.545 kb on + strandat 2963.559 kb on - strandat 2963.689 kb on + strandat 2963.793 kb on + strand, within Dshi_2804at 2963.796 kb on - strand, within Dshi_2804at 2963.850 kb on + strand, within Dshi_2804at 2963.884 kb on + strand, within Dshi_2804at 2963.958 kb on - strand, within Dshi_2804at 2964.017 kb on + strand, within Dshi_2804at 2964.058 kb on - strand, within Dshi_2804at 2964.060 kb on + strand, within Dshi_2804at 2964.072 kb on + strand, within Dshi_2804at 2964.208 kb on + strand, within Dshi_2804at 2964.236 kb on - strand, within Dshi_2804at 2964.240 kb on + strand, within Dshi_2804at 2964.320 kb on - strand, within Dshi_2804at 2964.330 kb on + strand, within Dshi_2804at 2964.366 kb on - strand, within Dshi_2804at 2964.429 kb on + strandat 2964.437 kb on - strandat 2964.458 kb on - strandat 2964.487 kb on + strandat 2964.557 kb on + strandat 2964.702 kb on - strand, within Dshi_2805at 2964.769 kb on - strand, within Dshi_2805at 2964.775 kb on + strand, within Dshi_2805at 2964.775 kb on + strand, within Dshi_2805at 2964.900 kb on + strandat 2964.941 kb on + strandat 2965.077 kb on + strand, within Dshi_2806at 2965.088 kb on + strand, within Dshi_2806at 2965.090 kb on - strand, within Dshi_2806at 2965.095 kb on - strand, within Dshi_2806at 2965.187 kb on - strand, within Dshi_2806at 2965.258 kb on + strand, within Dshi_2806at 2965.430 kb on + strand, within Dshi_2807at 2965.476 kb on - strand, within Dshi_2807

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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2,962,660 - Dshi_2803 0.49 +3.2
2,962,803 + Dshi_2803 0.58 +4.2
2,963,050 - Dshi_2803 0.72 +6.7
2,963,075 - Dshi_2803 0.74 +7.0
2,963,131 - Dshi_2803 0.77 +5.2
2,963,170 + Dshi_2803 0.79 +3.4
2,963,178 - Dshi_2803 0.80 +7.3
2,963,200 + Dshi_2803 0.81 +5.2
2,963,234 + Dshi_2803 0.83 +5.3
2,963,234 + Dshi_2803 0.83 +5.3
2,963,341 - Dshi_2803 0.89 +5.8
2,963,341 - Dshi_2803 0.89 +7.8
2,963,341 - Dshi_2803 0.89 +6.6
2,963,370 + +5.8
2,963,410 - +6.1
2,963,422 - +9.0
2,963,444 + +6.8
2,963,545 + -0.8
2,963,559 - -1.2
2,963,689 + +5.9
2,963,793 + Dshi_2804 0.16 +5.6
2,963,796 - Dshi_2804 0.16 +6.8
2,963,850 + Dshi_2804 0.23 +7.6
2,963,884 + Dshi_2804 0.27 +4.1
2,963,958 - Dshi_2804 0.35 +5.1
2,964,017 + Dshi_2804 0.42 +5.8
2,964,058 - Dshi_2804 0.47 +5.2
2,964,060 + Dshi_2804 0.47 +5.4
2,964,072 + Dshi_2804 0.49 +6.7
2,964,208 + Dshi_2804 0.65 +5.5
2,964,236 - Dshi_2804 0.68 +5.8
2,964,240 + Dshi_2804 0.68 +5.3
2,964,320 - Dshi_2804 0.78 +4.6
2,964,330 + Dshi_2804 0.79 +8.8
2,964,366 - Dshi_2804 0.83 +9.7
2,964,429 + +5.8
2,964,437 - +7.0
2,964,458 - +7.6
2,964,487 + +4.9
2,964,557 + +3.7
2,964,702 - Dshi_2805 0.43 +6.0
2,964,769 - Dshi_2805 0.64 +7.2
2,964,775 + Dshi_2805 0.65 +6.2
2,964,775 + Dshi_2805 0.65 +4.6
2,964,900 + +5.0
2,964,941 + +6.8
2,965,077 + Dshi_2806 0.41 +5.0
2,965,088 + Dshi_2806 0.43 +5.0
2,965,090 - Dshi_2806 0.44 +6.4
2,965,095 - Dshi_2806 0.45 +5.3
2,965,187 - Dshi_2806 0.67 +7.0
2,965,258 + Dshi_2806 0.84 +5.8
2,965,430 + Dshi_2807 0.15 +6.0
2,965,476 - Dshi_2807 0.24 +8.3

Or see this region's nucleotide sequence