Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2803

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2802 and Dshi_2803 are separated by 58 nucleotidesDshi_2803 and Dshi_2804 are separated by 134 nucleotides Dshi_2802: Dshi_2802 - oxidoreductase molybdopterin binding (RefSeq), at 2,960,490 to 2,961,767 _2802 Dshi_2803: Dshi_2803 - 5'-Nucleotidase domain protein (RefSeq), at 2,961,826 to 2,963,520 _2803 Dshi_2804: Dshi_2804 - diheme cytochrome c SoxA (RefSeq), at 2,963,655 to 2,964,509 _2804 Position (kb) 2961 2962 2963 2964Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 2960.883 kb on - strand, within Dshi_2802at 2960.969 kb on + strand, within Dshi_2802at 2961.020 kb on - strand, within Dshi_2802at 2961.072 kb on - strand, within Dshi_2802at 2961.112 kb on + strand, within Dshi_2802at 2961.263 kb on + strand, within Dshi_2802at 2961.271 kb on + strand, within Dshi_2802at 2961.271 kb on + strand, within Dshi_2802at 2961.279 kb on - strand, within Dshi_2802at 2961.279 kb on - strand, within Dshi_2802at 2961.279 kb on - strand, within Dshi_2802at 2961.364 kb on + strand, within Dshi_2802at 2961.372 kb on - strand, within Dshi_2802at 2961.372 kb on - strand, within Dshi_2802at 2961.426 kb on + strand, within Dshi_2802at 2961.476 kb on - strand, within Dshi_2802at 2961.476 kb on - strand, within Dshi_2802at 2961.636 kb on + strand, within Dshi_2802at 2961.679 kb on + strandat 2961.682 kb on - strandat 2961.860 kb on - strandat 2961.869 kb on + strandat 2961.918 kb on - strandat 2961.964 kb on + strandat 2961.996 kb on + strand, within Dshi_2803at 2962.025 kb on + strand, within Dshi_2803at 2962.253 kb on - strand, within Dshi_2803at 2962.273 kb on - strand, within Dshi_2803at 2962.362 kb on + strand, within Dshi_2803at 2962.365 kb on + strand, within Dshi_2803at 2962.375 kb on + strand, within Dshi_2803at 2962.500 kb on - strand, within Dshi_2803at 2962.551 kb on + strand, within Dshi_2803at 2962.660 kb on - strand, within Dshi_2803at 2962.803 kb on + strand, within Dshi_2803at 2963.050 kb on - strand, within Dshi_2803at 2963.075 kb on - strand, within Dshi_2803at 2963.131 kb on - strand, within Dshi_2803at 2963.170 kb on + strand, within Dshi_2803at 2963.178 kb on - strand, within Dshi_2803at 2963.200 kb on + strand, within Dshi_2803at 2963.234 kb on + strand, within Dshi_2803at 2963.234 kb on + strand, within Dshi_2803at 2963.341 kb on - strand, within Dshi_2803at 2963.341 kb on - strand, within Dshi_2803at 2963.341 kb on - strand, within Dshi_2803at 2963.370 kb on + strandat 2963.410 kb on - strandat 2963.422 kb on - strandat 2963.444 kb on + strandat 2963.545 kb on + strandat 2963.559 kb on - strandat 2963.689 kb on + strandat 2963.793 kb on + strand, within Dshi_2804at 2963.796 kb on - strand, within Dshi_2804at 2963.850 kb on + strand, within Dshi_2804at 2963.884 kb on + strand, within Dshi_2804at 2963.958 kb on - strand, within Dshi_2804at 2964.017 kb on + strand, within Dshi_2804at 2964.058 kb on - strand, within Dshi_2804at 2964.060 kb on + strand, within Dshi_2804at 2964.072 kb on + strand, within Dshi_2804at 2964.208 kb on + strand, within Dshi_2804at 2964.236 kb on - strand, within Dshi_2804at 2964.240 kb on + strand, within Dshi_2804at 2964.320 kb on - strand, within Dshi_2804at 2964.330 kb on + strand, within Dshi_2804at 2964.366 kb on - strand, within Dshi_2804at 2964.429 kb on + strandat 2964.437 kb on - strandat 2964.458 kb on - strandat 2964.487 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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2,960,883 - Dshi_2802 0.31 -2.6
2,960,969 + Dshi_2802 0.37 +0.9
2,961,020 - Dshi_2802 0.41 +2.5
2,961,072 - Dshi_2802 0.46 -3.6
2,961,112 + Dshi_2802 0.49 +0.3
2,961,263 + Dshi_2802 0.60 -0.1
2,961,271 + Dshi_2802 0.61 +0.9
2,961,271 + Dshi_2802 0.61 -0.2
2,961,279 - Dshi_2802 0.62 +2.9
2,961,279 - Dshi_2802 0.62 +1.5
2,961,279 - Dshi_2802 0.62 -1.9
2,961,364 + Dshi_2802 0.68 +1.3
2,961,372 - Dshi_2802 0.69 -0.4
2,961,372 - Dshi_2802 0.69 +0.2
2,961,426 + Dshi_2802 0.73 +0.2
2,961,476 - Dshi_2802 0.77 -1.1
2,961,476 - Dshi_2802 0.77 -1.3
2,961,636 + Dshi_2802 0.90 -0.5
2,961,679 + +1.8
2,961,682 - -1.0
2,961,860 - +3.9
2,961,869 + +6.8
2,961,918 - +5.1
2,961,964 + +6.6
2,961,996 + Dshi_2803 0.10 +7.1
2,962,025 + Dshi_2803 0.12 +5.9
2,962,253 - Dshi_2803 0.25 +5.4
2,962,273 - Dshi_2803 0.26 +8.5
2,962,362 + Dshi_2803 0.32 +6.4
2,962,365 + Dshi_2803 0.32 +4.3
2,962,375 + Dshi_2803 0.32 +6.5
2,962,500 - Dshi_2803 0.40 +6.3
2,962,551 + Dshi_2803 0.43 +4.6
2,962,660 - Dshi_2803 0.49 +3.2
2,962,803 + Dshi_2803 0.58 +4.2
2,963,050 - Dshi_2803 0.72 +6.7
2,963,075 - Dshi_2803 0.74 +7.0
2,963,131 - Dshi_2803 0.77 +5.2
2,963,170 + Dshi_2803 0.79 +3.4
2,963,178 - Dshi_2803 0.80 +7.3
2,963,200 + Dshi_2803 0.81 +5.2
2,963,234 + Dshi_2803 0.83 +5.3
2,963,234 + Dshi_2803 0.83 +5.3
2,963,341 - Dshi_2803 0.89 +5.8
2,963,341 - Dshi_2803 0.89 +7.8
2,963,341 - Dshi_2803 0.89 +6.6
2,963,370 + +5.8
2,963,410 - +6.1
2,963,422 - +9.0
2,963,444 + +6.8
2,963,545 + -0.8
2,963,559 - -1.2
2,963,689 + +5.9
2,963,793 + Dshi_2804 0.16 +5.6
2,963,796 - Dshi_2804 0.16 +6.8
2,963,850 + Dshi_2804 0.23 +7.6
2,963,884 + Dshi_2804 0.27 +4.1
2,963,958 - Dshi_2804 0.35 +5.1
2,964,017 + Dshi_2804 0.42 +5.8
2,964,058 - Dshi_2804 0.47 +5.2
2,964,060 + Dshi_2804 0.47 +5.4
2,964,072 + Dshi_2804 0.49 +6.7
2,964,208 + Dshi_2804 0.65 +5.5
2,964,236 - Dshi_2804 0.68 +5.8
2,964,240 + Dshi_2804 0.68 +5.3
2,964,320 - Dshi_2804 0.78 +4.6
2,964,330 + Dshi_2804 0.79 +8.8
2,964,366 - Dshi_2804 0.83 +9.7
2,964,429 + +5.8
2,964,437 - +7.0
2,964,458 - +7.6
2,964,487 + +4.9

Or see this region's nucleotide sequence