Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2773

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_2771 and Dshi_2772 are separated by 146 nucleotidesDshi_2772 and Dshi_2773 overlap by 4 nucleotidesDshi_2773 and Dshi_2774 overlap by 4 nucleotidesDshi_2774 and Dshi_2775 are separated by 58 nucleotides Dshi_2771: Dshi_2771 - Guanine deaminase (RefSeq), at 2,933,279 to 2,934,565 _2771 Dshi_2772: Dshi_2772 - SCP-like extracellular (RefSeq), at 2,934,712 to 2,935,170 _2772 Dshi_2773: Dshi_2773 - amidohydrolase (RefSeq), at 2,935,167 to 2,936,507 _2773 Dshi_2774: Dshi_2774 - histidinol-phosphate phosphatase, putative (RefSeq), at 2,936,504 to 2,937,325 _2774 Dshi_2775: Dshi_2775 - transcriptional regulator, XRE family (RefSeq), at 2,937,384 to 2,937,755 _2775 Position (kb) 2935 2936 2937Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2934.182 kb on - strand, within Dshi_2771at 2934.182 kb on - strand, within Dshi_2771at 2934.216 kb on + strand, within Dshi_2771at 2934.265 kb on + strand, within Dshi_2771at 2934.278 kb on - strand, within Dshi_2771at 2934.311 kb on + strand, within Dshi_2771at 2934.313 kb on + strand, within Dshi_2771at 2934.433 kb on + strand, within Dshi_2771at 2934.556 kb on + strandat 2934.609 kb on - strandat 2934.688 kb on + strandat 2934.727 kb on - strandat 2934.780 kb on + strand, within Dshi_2772at 2934.921 kb on + strand, within Dshi_2772at 2934.990 kb on - strand, within Dshi_2772at 2934.990 kb on - strand, within Dshi_2772at 2935.338 kb on + strand, within Dshi_2773at 2935.368 kb on - strand, within Dshi_2773at 2935.648 kb on - strand, within Dshi_2773at 2935.737 kb on + strand, within Dshi_2773at 2935.740 kb on - strand, within Dshi_2773at 2935.740 kb on - strand, within Dshi_2773at 2935.745 kb on - strand, within Dshi_2773at 2935.856 kb on - strand, within Dshi_2773at 2935.882 kb on - strand, within Dshi_2773at 2935.889 kb on + strand, within Dshi_2773at 2935.910 kb on + strand, within Dshi_2773at 2935.917 kb on - strand, within Dshi_2773at 2935.917 kb on - strand, within Dshi_2773at 2936.123 kb on + strand, within Dshi_2773at 2936.220 kb on - strand, within Dshi_2773at 2936.238 kb on - strand, within Dshi_2773at 2936.251 kb on - strand, within Dshi_2773at 2936.295 kb on - strand, within Dshi_2773at 2936.320 kb on + strand, within Dshi_2773at 2936.328 kb on - strand, within Dshi_2773at 2936.387 kb on + strandat 2936.390 kb on - strandat 2936.477 kb on - strandat 2937.328 kb on + strandat 2937.381 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
remove
2,934,182 - Dshi_2771 0.70 +2.5
2,934,182 - Dshi_2771 0.70 -1.4
2,934,216 + Dshi_2771 0.73 -1.5
2,934,265 + Dshi_2771 0.77 -2.0
2,934,278 - Dshi_2771 0.78 +2.5
2,934,311 + Dshi_2771 0.80 -1.9
2,934,313 + Dshi_2771 0.80 +0.7
2,934,433 + Dshi_2771 0.90 +2.5
2,934,556 + -0.9
2,934,609 - -2.4
2,934,688 + +1.9
2,934,727 - +0.9
2,934,780 + Dshi_2772 0.15 -0.2
2,934,921 + Dshi_2772 0.46 +0.9
2,934,990 - Dshi_2772 0.61 +0.5
2,934,990 - Dshi_2772 0.61 -2.9
2,935,338 + Dshi_2773 0.13 -2.7
2,935,368 - Dshi_2773 0.15 +2.5
2,935,648 - Dshi_2773 0.36 +0.9
2,935,737 + Dshi_2773 0.43 +1.4
2,935,740 - Dshi_2773 0.43 -0.8
2,935,740 - Dshi_2773 0.43 +0.9
2,935,745 - Dshi_2773 0.43 +1.2
2,935,856 - Dshi_2773 0.51 -2.4
2,935,882 - Dshi_2773 0.53 +0.9
2,935,889 + Dshi_2773 0.54 +0.9
2,935,910 + Dshi_2773 0.55 -0.9
2,935,917 - Dshi_2773 0.56 -2.4
2,935,917 - Dshi_2773 0.56 +0.9
2,936,123 + Dshi_2773 0.71 -1.4
2,936,220 - Dshi_2773 0.79 +0.4
2,936,238 - Dshi_2773 0.80 +0.5
2,936,251 - Dshi_2773 0.81 -0.3
2,936,295 - Dshi_2773 0.84 -0.6
2,936,320 + Dshi_2773 0.86 +0.9
2,936,328 - Dshi_2773 0.87 -0.6
2,936,387 + +0.9
2,936,390 - +1.0
2,936,477 - +0.2
2,937,328 + +0.9
2,937,381 + -0.1

Or see this region's nucleotide sequence