Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2736

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2734 and Dshi_2735 overlap by 1 nucleotidesDshi_2735 and Dshi_2736 overlap by 1 nucleotidesDshi_2736 and Dshi_2737 are separated by 66 nucleotides Dshi_2734: Dshi_2734 - hypothetical protein (RefSeq), at 2,896,047 to 2,896,241 _2734 Dshi_2735: Dshi_2735 - HflC protein (RefSeq), at 2,896,241 to 2,897,134 _2735 Dshi_2736: Dshi_2736 - HflK protein (RefSeq), at 2,897,134 to 2,898,282 _2736 Dshi_2737: Dshi_2737 - pyridine nucleotide-disulphide oxidoreductase dimerisation region (RefSeq), at 2,898,349 to 2,899,800 _2737 Position (kb) 2897 2898 2899Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 2896.426 kb on - strand, within Dshi_2735at 2896.438 kb on + strand, within Dshi_2735at 2896.440 kb on + strand, within Dshi_2735at 2896.533 kb on - strand, within Dshi_2735at 2896.670 kb on + strand, within Dshi_2735at 2896.704 kb on - strand, within Dshi_2735at 2896.759 kb on - strand, within Dshi_2735at 2897.013 kb on + strand, within Dshi_2735at 2897.021 kb on - strand, within Dshi_2735at 2897.021 kb on - strand, within Dshi_2735at 2897.021 kb on - strand, within Dshi_2735at 2897.026 kb on - strand, within Dshi_2735at 2897.116 kb on - strandat 2897.153 kb on - strandat 2897.153 kb on - strandat 2897.166 kb on - strandat 2897.272 kb on - strand, within Dshi_2736at 2897.372 kb on + strand, within Dshi_2736at 2897.399 kb on + strand, within Dshi_2736at 2897.520 kb on + strand, within Dshi_2736at 2897.525 kb on + strand, within Dshi_2736at 2897.587 kb on + strand, within Dshi_2736at 2897.662 kb on - strand, within Dshi_2736at 2897.688 kb on - strand, within Dshi_2736at 2897.700 kb on + strand, within Dshi_2736at 2897.807 kb on - strand, within Dshi_2736at 2897.885 kb on - strand, within Dshi_2736at 2897.916 kb on - strand, within Dshi_2736at 2898.006 kb on + strand, within Dshi_2736at 2898.104 kb on + strand, within Dshi_2736at 2898.226 kb on - strandat 2898.327 kb on - strandat 2898.327 kb on - strandat 2898.410 kb on + strandat 2898.410 kb on + strandat 2898.418 kb on - strandat 2898.418 kb on - strandat 2898.418 kb on - strandat 2898.516 kb on - strand, within Dshi_2737at 2898.598 kb on - strand, within Dshi_2737at 2898.636 kb on + strand, within Dshi_2737at 2898.674 kb on - strand, within Dshi_2737at 2898.862 kb on - strand, within Dshi_2737at 2898.872 kb on + strand, within Dshi_2737at 2898.880 kb on - strand, within Dshi_2737at 2898.915 kb on + strand, within Dshi_2737at 2899.068 kb on - strand, within Dshi_2737at 2899.073 kb on - strand, within Dshi_2737at 2899.194 kb on - strand, within Dshi_2737at 2899.238 kb on - strand, within Dshi_2737

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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2,896,426 - Dshi_2735 0.21 +2.5
2,896,438 + Dshi_2735 0.22 +0.1
2,896,440 + Dshi_2735 0.22 +0.5
2,896,533 - Dshi_2735 0.33 -0.1
2,896,670 + Dshi_2735 0.48 -2.3
2,896,704 - Dshi_2735 0.52 -0.8
2,896,759 - Dshi_2735 0.58 +3.7
2,897,013 + Dshi_2735 0.86 -0.3
2,897,021 - Dshi_2735 0.87 -0.3
2,897,021 - Dshi_2735 0.87 +2.9
2,897,021 - Dshi_2735 0.87 -0.5
2,897,026 - Dshi_2735 0.88 +2.5
2,897,116 - +0.9
2,897,153 - +0.9
2,897,153 - +0.1
2,897,166 - -0.2
2,897,272 - Dshi_2736 0.12 +0.2
2,897,372 + Dshi_2736 0.21 +0.4
2,897,399 + Dshi_2736 0.23 -0.5
2,897,520 + Dshi_2736 0.34 +0.4
2,897,525 + Dshi_2736 0.34 -0.5
2,897,587 + Dshi_2736 0.39 +0.9
2,897,662 - Dshi_2736 0.46 +0.7
2,897,688 - Dshi_2736 0.48 +2.5
2,897,700 + Dshi_2736 0.49 -0.8
2,897,807 - Dshi_2736 0.59 +0.9
2,897,885 - Dshi_2736 0.65 -1.4
2,897,916 - Dshi_2736 0.68 +0.2
2,898,006 + Dshi_2736 0.76 +0.6
2,898,104 + Dshi_2736 0.84 +0.3
2,898,226 - -1.3
2,898,327 - -0.8
2,898,327 - +1.5
2,898,410 + +5.7
2,898,410 + +5.0
2,898,418 - +4.3
2,898,418 - +4.6
2,898,418 - +4.8
2,898,516 - Dshi_2737 0.12 +6.7
2,898,598 - Dshi_2737 0.17 +5.2
2,898,636 + Dshi_2737 0.20 +5.0
2,898,674 - Dshi_2737 0.22 +3.2
2,898,862 - Dshi_2737 0.35 +4.9
2,898,872 + Dshi_2737 0.36 +7.5
2,898,880 - Dshi_2737 0.37 +4.9
2,898,915 + Dshi_2737 0.39 +7.8
2,899,068 - Dshi_2737 0.50 +5.6
2,899,073 - Dshi_2737 0.50 +5.0
2,899,194 - Dshi_2737 0.58 +5.2
2,899,238 - Dshi_2737 0.61 +4.5

Or see this region's nucleotide sequence