Experiment: m.b. Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2538 and Dshi_2539 are separated by 168 nucleotides Dshi_2539 and Dshi_2540 are separated by 65 nucleotides Dshi_2540 and Dshi_2541 are separated by 154 nucleotides
Dshi_2538: Dshi_2538 - fumarylacetoacetate (FAA) hydrolase (RefSeq), at 2,695,338 to 2,696,024
_2538
Dshi_2539: Dshi_2539 - GntR domain protein (RefSeq), at 2,696,193 to 2,696,882
_2539
Dshi_2540: Dshi_2540 - hypothetical protein (RefSeq), at 2,696,948 to 2,697,499
_2540
Dshi_2541: Dshi_2541 - GntR domain protein (RefSeq), at 2,697,654 to 2,698,334
_2541
Position (kb)
2696
2697
2698 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2696.203 kb on + strand at 2696.206 kb on - strand at 2696.286 kb on - strand, within Dshi_2539 at 2696.355 kb on + strand, within Dshi_2539 at 2696.412 kb on + strand, within Dshi_2539 at 2696.412 kb on + strand, within Dshi_2539 at 2696.420 kb on - strand, within Dshi_2539 at 2696.420 kb on - strand, within Dshi_2539 at 2696.420 kb on - strand, within Dshi_2539 at 2696.439 kb on - strand, within Dshi_2539 at 2696.477 kb on + strand, within Dshi_2539 at 2696.485 kb on - strand, within Dshi_2539 at 2696.521 kb on + strand, within Dshi_2539 at 2696.547 kb on + strand, within Dshi_2539 at 2696.605 kb on + strand, within Dshi_2539 at 2696.613 kb on - strand, within Dshi_2539 at 2696.655 kb on + strand, within Dshi_2539 at 2696.686 kb on + strand, within Dshi_2539 at 2696.712 kb on + strand, within Dshi_2539 at 2696.720 kb on - strand, within Dshi_2539 at 2696.733 kb on - strand, within Dshi_2539 at 2696.757 kb on + strand, within Dshi_2539 at 2696.772 kb on - strand, within Dshi_2539 at 2696.772 kb on - strand, within Dshi_2539 at 2696.809 kb on + strand, within Dshi_2539 at 2696.843 kb on + strand at 2696.884 kb on - strand at 2696.889 kb on - strand at 2696.905 kb on - strand at 2696.924 kb on + strand at 2697.012 kb on + strand, within Dshi_2540 at 2697.038 kb on + strand, within Dshi_2540 at 2697.038 kb on + strand, within Dshi_2540 at 2697.049 kb on - strand, within Dshi_2540 at 2697.098 kb on - strand, within Dshi_2540 at 2697.113 kb on + strand, within Dshi_2540 at 2697.157 kb on - strand, within Dshi_2540 at 2697.282 kb on + strand, within Dshi_2540 at 2697.301 kb on - strand, within Dshi_2540 at 2697.384 kb on + strand, within Dshi_2540 at 2697.434 kb on + strand, within Dshi_2540 at 2697.434 kb on + strand, within Dshi_2540 at 2697.434 kb on + strand, within Dshi_2540 at 2697.442 kb on - strand, within Dshi_2540 at 2697.442 kb on - strand, within Dshi_2540 at 2697.459 kb on - strand at 2697.517 kb on + strand at 2697.524 kb on + strand at 2697.525 kb on - strand at 2697.543 kb on + strand at 2697.641 kb on - strand at 2697.649 kb on - strand at 2697.649 kb on - strand at 2697.652 kb on + strand at 2697.652 kb on + strand at 2697.669 kb on - strand at 2697.673 kb on + strand at 2697.725 kb on - strand, within Dshi_2541 at 2697.744 kb on + strand, within Dshi_2541 at 2697.821 kb on - strand, within Dshi_2541 at 2697.832 kb on - strand, within Dshi_2541 at 2697.835 kb on - strand, within Dshi_2541 at 2697.888 kb on + strand, within Dshi_2541 at 2697.935 kb on + strand, within Dshi_2541 at 2697.935 kb on + strand, within Dshi_2541 at 2697.971 kb on + strand, within Dshi_2541 at 2697.974 kb on - strand, within Dshi_2541 at 2698.027 kb on + strand, within Dshi_2541 at 2698.056 kb on - strand, within Dshi_2541 at 2698.063 kb on + strand, within Dshi_2541 at 2698.063 kb on + strand, within Dshi_2541 at 2698.071 kb on - strand, within Dshi_2541 at 2698.231 kb on + strand, within Dshi_2541 at 2698.279 kb on - strand at 2698.383 kb on - strand at 2698.407 kb on - strand at 2698.409 kb on + strand at 2698.442 kb on - strand at 2698.466 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml remove 2,696,203 + +0.8 2,696,206 - +2.9 2,696,286 - Dshi_2539 0.13 -0.3 2,696,355 + Dshi_2539 0.23 +0.5 2,696,412 + Dshi_2539 0.32 +0.9 2,696,412 + Dshi_2539 0.32 -0.1 2,696,420 - Dshi_2539 0.33 -0.0 2,696,420 - Dshi_2539 0.33 +2.4 2,696,420 - Dshi_2539 0.33 +1.0 2,696,439 - Dshi_2539 0.36 -0.6 2,696,477 + Dshi_2539 0.41 +1.3 2,696,485 - Dshi_2539 0.42 +0.3 2,696,521 + Dshi_2539 0.48 -1.6 2,696,547 + Dshi_2539 0.51 -0.0 2,696,605 + Dshi_2539 0.60 +0.4 2,696,613 - Dshi_2539 0.61 +0.4 2,696,655 + Dshi_2539 0.67 -1.6 2,696,686 + Dshi_2539 0.71 -2.0 2,696,712 + Dshi_2539 0.75 +1.2 2,696,720 - Dshi_2539 0.76 +1.7 2,696,733 - Dshi_2539 0.78 +0.9 2,696,757 + Dshi_2539 0.82 +0.7 2,696,772 - Dshi_2539 0.84 +0.8 2,696,772 - Dshi_2539 0.84 -2.0 2,696,809 + Dshi_2539 0.89 +0.8 2,696,843 + +1.9 2,696,884 - +0.2 2,696,889 - +0.6 2,696,905 - -0.6 2,696,924 + -1.6 2,697,012 + Dshi_2540 0.12 +2.1 2,697,038 + Dshi_2540 0.16 -0.5 2,697,038 + Dshi_2540 0.16 +1.1 2,697,049 - Dshi_2540 0.18 +0.2 2,697,098 - Dshi_2540 0.27 +1.0 2,697,113 + Dshi_2540 0.30 +2.6 2,697,157 - Dshi_2540 0.38 +1.0 2,697,282 + Dshi_2540 0.61 -3.0 2,697,301 - Dshi_2540 0.64 +1.1 2,697,384 + Dshi_2540 0.79 +0.8 2,697,434 + Dshi_2540 0.88 -2.6 2,697,434 + Dshi_2540 0.88 -2.6 2,697,434 + Dshi_2540 0.88 -2.9 2,697,442 - Dshi_2540 0.89 -1.1 2,697,442 - Dshi_2540 0.89 +3.0 2,697,459 - +1.5 2,697,517 + -0.8 2,697,524 + +0.0 2,697,525 - -1.3 2,697,543 + -0.5 2,697,641 - -0.7 2,697,649 - -2.0 2,697,649 - -0.4 2,697,652 + +1.5 2,697,652 + +1.7 2,697,669 - +0.4 2,697,673 + +2.1 2,697,725 - Dshi_2541 0.10 +1.0 2,697,744 + Dshi_2541 0.13 +2.6 2,697,821 - Dshi_2541 0.25 +0.8 2,697,832 - Dshi_2541 0.26 +1.1 2,697,835 - Dshi_2541 0.27 +0.7 2,697,888 + Dshi_2541 0.34 -0.2 2,697,935 + Dshi_2541 0.41 +0.7 2,697,935 + Dshi_2541 0.41 -0.5 2,697,971 + Dshi_2541 0.47 -4.1 2,697,974 - Dshi_2541 0.47 -1.3 2,698,027 + Dshi_2541 0.55 +0.6 2,698,056 - Dshi_2541 0.59 +1.1 2,698,063 + Dshi_2541 0.60 +1.0 2,698,063 + Dshi_2541 0.60 +1.0 2,698,071 - Dshi_2541 0.61 -1.6 2,698,231 + Dshi_2541 0.85 +0.1 2,698,279 - +0.7 2,698,383 - +1.3 2,698,407 - -0.1 2,698,409 + +0.7 2,698,442 - -0.3 2,698,466 - +0.8
Or see this region's nucleotide sequence