Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2341

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2340 and Dshi_2341 are separated by 499 nucleotidesDshi_2341 and Dshi_2342 are separated by 17 nucleotides Dshi_2340: Dshi_2340 - ribonuclease, Rne/Rng family (RefSeq), at 2,468,813 to 2,471,893 _2340 Dshi_2341: Dshi_2341 - TRAP C4-dicarboxylate transport system permease DctM subunit (RefSeq), at 2,472,393 to 2,474,747 _2341 Dshi_2342: Dshi_2342 - TRAP-type mannitol/chloroaromatic compound transport system small permease component-like protein (RefSeq), at 2,474,765 to 2,475,718 _2342 Position (kb) 2472 2473 2474 2475Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2472.189 kb on - strandat 2472.332 kb on - strandat 2472.436 kb on - strandat 2472.482 kb on + strandat 2472.532 kb on - strandat 2472.532 kb on - strandat 2472.586 kb on - strandat 2472.588 kb on - strandat 2472.631 kb on - strand, within Dshi_2341at 2472.875 kb on - strand, within Dshi_2341at 2472.935 kb on - strand, within Dshi_2341at 2472.942 kb on + strand, within Dshi_2341at 2472.996 kb on + strand, within Dshi_2341at 2473.004 kb on - strand, within Dshi_2341at 2473.173 kb on + strand, within Dshi_2341at 2473.181 kb on - strand, within Dshi_2341at 2473.186 kb on - strand, within Dshi_2341at 2473.195 kb on + strand, within Dshi_2341at 2473.559 kb on - strand, within Dshi_2341at 2473.689 kb on - strand, within Dshi_2341at 2473.699 kb on - strand, within Dshi_2341at 2473.709 kb on - strand, within Dshi_2341at 2473.784 kb on + strand, within Dshi_2341at 2473.828 kb on - strand, within Dshi_2341at 2473.857 kb on - strand, within Dshi_2341at 2473.897 kb on + strand, within Dshi_2341at 2473.936 kb on + strand, within Dshi_2341at 2473.944 kb on - strand, within Dshi_2341at 2474.004 kb on + strand, within Dshi_2341at 2474.125 kb on + strand, within Dshi_2341at 2474.125 kb on + strand, within Dshi_2341at 2474.163 kb on + strand, within Dshi_2341at 2474.251 kb on - strand, within Dshi_2341at 2474.363 kb on - strand, within Dshi_2341at 2474.382 kb on + strand, within Dshi_2341at 2474.390 kb on - strand, within Dshi_2341at 2474.423 kb on - strand, within Dshi_2341at 2474.490 kb on - strand, within Dshi_2341at 2474.500 kb on - strand, within Dshi_2341at 2474.500 kb on - strand, within Dshi_2341at 2474.594 kb on + strandat 2474.594 kb on + strandat 2474.602 kb on - strandat 2474.604 kb on + strandat 2474.604 kb on + strandat 2474.604 kb on + strandat 2474.607 kb on - strandat 2474.612 kb on - strandat 2474.612 kb on - strandat 2474.658 kb on + strandat 2474.717 kb on - strandat 2474.825 kb on - strandat 2474.827 kb on + strandat 2474.837 kb on + strandat 2474.845 kb on - strandat 2474.944 kb on + strand, within Dshi_2342at 2474.973 kb on - strand, within Dshi_2342at 2474.982 kb on + strand, within Dshi_2342at 2475.038 kb on + strand, within Dshi_2342at 2475.040 kb on + strand, within Dshi_2342at 2475.158 kb on - strand, within Dshi_2342at 2475.171 kb on - strand, within Dshi_2342at 2475.173 kb on + strand, within Dshi_2342at 2475.216 kb on + strand, within Dshi_2342at 2475.216 kb on + strand, within Dshi_2342at 2475.345 kb on + strand, within Dshi_2342at 2475.429 kb on - strand, within Dshi_2342at 2475.449 kb on - strand, within Dshi_2342at 2475.450 kb on + strand, within Dshi_2342at 2475.458 kb on - strand, within Dshi_2342at 2475.480 kb on + strand, within Dshi_2342at 2475.544 kb on - strand, within Dshi_2342at 2475.560 kb on + strand, within Dshi_2342at 2475.568 kb on - strand, within Dshi_2342at 2475.570 kb on + strand, within Dshi_2342at 2475.571 kb on + strand, within Dshi_2342at 2475.579 kb on - strand, within Dshi_2342at 2475.579 kb on - strand, within Dshi_2342at 2475.604 kb on - strand, within Dshi_2342at 2475.645 kb on - strandat 2475.666 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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2,472,189 - +1.6
2,472,332 - +1.3
2,472,436 - +0.0
2,472,482 + +1.5
2,472,532 - -2.9
2,472,532 - -0.6
2,472,586 - -1.6
2,472,588 - +0.2
2,472,631 - Dshi_2341 0.10 -0.8
2,472,875 - Dshi_2341 0.20 -1.6
2,472,935 - Dshi_2341 0.23 +0.1
2,472,942 + Dshi_2341 0.23 -1.7
2,472,996 + Dshi_2341 0.26 +0.8
2,473,004 - Dshi_2341 0.26 -0.5
2,473,173 + Dshi_2341 0.33 +1.1
2,473,181 - Dshi_2341 0.33 +2.5
2,473,186 - Dshi_2341 0.34 +1.4
2,473,195 + Dshi_2341 0.34 +0.9
2,473,559 - Dshi_2341 0.50 -1.9
2,473,689 - Dshi_2341 0.55 +0.2
2,473,699 - Dshi_2341 0.55 -0.4
2,473,709 - Dshi_2341 0.56 -0.5
2,473,784 + Dshi_2341 0.59 +0.0
2,473,828 - Dshi_2341 0.61 +0.5
2,473,857 - Dshi_2341 0.62 +0.1
2,473,897 + Dshi_2341 0.64 +0.3
2,473,936 + Dshi_2341 0.66 -1.8
2,473,944 - Dshi_2341 0.66 -0.7
2,474,004 + Dshi_2341 0.68 +0.1
2,474,125 + Dshi_2341 0.74 -2.8
2,474,125 + Dshi_2341 0.74 -0.5
2,474,163 + Dshi_2341 0.75 -3.1
2,474,251 - Dshi_2341 0.79 -1.8
2,474,363 - Dshi_2341 0.84 -3.3
2,474,382 + Dshi_2341 0.84 -1.9
2,474,390 - Dshi_2341 0.85 -3.0
2,474,423 - Dshi_2341 0.86 +1.0
2,474,490 - Dshi_2341 0.89 -1.1
2,474,500 - Dshi_2341 0.89 -0.5
2,474,500 - Dshi_2341 0.89 -0.2
2,474,594 + -0.8
2,474,594 + +0.4
2,474,602 - -2.3
2,474,604 + +0.5
2,474,604 + +2.1
2,474,604 + -2.6
2,474,607 - -2.6
2,474,612 - +0.2
2,474,612 - -1.2
2,474,658 + -0.1
2,474,717 - -0.6
2,474,825 - -2.0
2,474,827 + -3.1
2,474,837 + -3.0
2,474,845 - -1.0
2,474,944 + Dshi_2342 0.19 +1.1
2,474,973 - Dshi_2342 0.22 -1.7
2,474,982 + Dshi_2342 0.23 +0.7
2,475,038 + Dshi_2342 0.29 -1.1
2,475,040 + Dshi_2342 0.29 +0.2
2,475,158 - Dshi_2342 0.41 +2.4
2,475,171 - Dshi_2342 0.43 -0.3
2,475,173 + Dshi_2342 0.43 +0.3
2,475,216 + Dshi_2342 0.47 -3.5
2,475,216 + Dshi_2342 0.47 +3.4
2,475,345 + Dshi_2342 0.61 +0.4
2,475,429 - Dshi_2342 0.70 -0.3
2,475,449 - Dshi_2342 0.72 -1.0
2,475,450 + Dshi_2342 0.72 +0.6
2,475,458 - Dshi_2342 0.73 +0.6
2,475,480 + Dshi_2342 0.75 +1.1
2,475,544 - Dshi_2342 0.82 +0.0
2,475,560 + Dshi_2342 0.83 -1.0
2,475,568 - Dshi_2342 0.84 +0.7
2,475,570 + Dshi_2342 0.84 +1.7
2,475,571 + Dshi_2342 0.84 +2.8
2,475,579 - Dshi_2342 0.85 -0.0
2,475,579 - Dshi_2342 0.85 +1.1
2,475,604 - Dshi_2342 0.88 -0.9
2,475,645 - +1.2
2,475,666 - -3.8

Or see this region's nucleotide sequence