Experiment: m.b. Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2288 and Dshi_2289 are separated by 30 nucleotides Dshi_2289 and Dshi_2290 are separated by 8 nucleotides
Dshi_2288: Dshi_2288 - TRAP transporter solute receptor, TAXI family (RefSeq), at 2,417,255 to 2,418,247
_2288
Dshi_2289: Dshi_2289 - amidohydrolase (RefSeq), at 2,418,278 to 2,419,648
_2289
Dshi_2290: Dshi_2290 - Carbohydrate-selective porin OprB (RefSeq), at 2,419,657 to 2,420,955
_2290
Position (kb)
2418
2419
2420 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2417.328 kb on - strand at 2417.334 kb on + strand at 2417.402 kb on - strand, within Dshi_2288 at 2417.420 kb on - strand, within Dshi_2288 at 2417.427 kb on - strand, within Dshi_2288 at 2417.499 kb on + strand, within Dshi_2288 at 2417.524 kb on + strand, within Dshi_2288 at 2417.531 kb on - strand, within Dshi_2288 at 2417.532 kb on - strand, within Dshi_2288 at 2417.542 kb on - strand, within Dshi_2288 at 2417.560 kb on - strand, within Dshi_2288 at 2417.584 kb on - strand, within Dshi_2288 at 2417.594 kb on - strand, within Dshi_2288 at 2417.596 kb on + strand, within Dshi_2288 at 2417.596 kb on + strand, within Dshi_2288 at 2417.596 kb on + strand, within Dshi_2288 at 2417.715 kb on - strand, within Dshi_2288 at 2417.744 kb on - strand, within Dshi_2288 at 2417.744 kb on - strand, within Dshi_2288 at 2417.759 kb on + strand, within Dshi_2288 at 2417.767 kb on - strand, within Dshi_2288 at 2417.812 kb on + strand, within Dshi_2288 at 2417.836 kb on - strand, within Dshi_2288 at 2417.892 kb on + strand, within Dshi_2288 at 2417.909 kb on + strand, within Dshi_2288 at 2417.946 kb on + strand, within Dshi_2288 at 2417.957 kb on + strand, within Dshi_2288 at 2417.982 kb on + strand, within Dshi_2288 at 2417.985 kb on - strand, within Dshi_2288 at 2417.985 kb on - strand, within Dshi_2288 at 2418.000 kb on + strand, within Dshi_2288 at 2418.008 kb on - strand, within Dshi_2288 at 2418.064 kb on + strand, within Dshi_2288 at 2418.177 kb on + strand at 2418.273 kb on + strand at 2418.295 kb on - strand at 2418.300 kb on - strand at 2418.317 kb on + strand at 2418.325 kb on - strand at 2418.408 kb on - strand at 2418.432 kb on + strand, within Dshi_2289 at 2418.440 kb on - strand, within Dshi_2289 at 2418.470 kb on + strand, within Dshi_2289 at 2418.543 kb on + strand, within Dshi_2289 at 2418.549 kb on + strand, within Dshi_2289 at 2418.549 kb on + strand, within Dshi_2289 at 2418.571 kb on + strand, within Dshi_2289 at 2418.615 kb on - strand, within Dshi_2289 at 2418.623 kb on + strand, within Dshi_2289 at 2418.851 kb on - strand, within Dshi_2289 at 2418.856 kb on - strand, within Dshi_2289 at 2418.900 kb on + strand, within Dshi_2289 at 2418.937 kb on - strand, within Dshi_2289 at 2418.937 kb on - strand, within Dshi_2289 at 2418.937 kb on - strand, within Dshi_2289 at 2419.075 kb on + strand, within Dshi_2289 at 2419.095 kb on + strand, within Dshi_2289 at 2419.137 kb on + strand, within Dshi_2289 at 2419.145 kb on - strand, within Dshi_2289 at 2419.180 kb on + strand, within Dshi_2289 at 2419.181 kb on - strand, within Dshi_2289 at 2419.210 kb on - strand, within Dshi_2289 at 2419.211 kb on - strand, within Dshi_2289 at 2419.244 kb on - strand, within Dshi_2289 at 2419.318 kb on - strand, within Dshi_2289 at 2419.404 kb on + strand, within Dshi_2289 at 2419.406 kb on + strand, within Dshi_2289 at 2419.414 kb on - strand, within Dshi_2289 at 2419.414 kb on - strand, within Dshi_2289 at 2419.414 kb on - strand, within Dshi_2289 at 2419.452 kb on + strand, within Dshi_2289 at 2419.454 kb on + strand, within Dshi_2289 at 2419.494 kb on + strand, within Dshi_2289 at 2419.530 kb on + strand at 2419.722 kb on - strand at 2419.754 kb on - strand at 2419.754 kb on - strand at 2419.770 kb on - strand at 2419.799 kb on - strand, within Dshi_2290 at 2419.802 kb on + strand, within Dshi_2290 at 2419.827 kb on - strand, within Dshi_2290 at 2419.827 kb on - strand, within Dshi_2290 at 2419.849 kb on + strand, within Dshi_2290 at 2419.884 kb on + strand, within Dshi_2290 at 2419.978 kb on - strand, within Dshi_2290 at 2419.978 kb on - strand, within Dshi_2290 at 2420.015 kb on + strand, within Dshi_2290 at 2420.075 kb on + strand, within Dshi_2290 at 2420.110 kb on - strand, within Dshi_2290 at 2420.215 kb on + strand, within Dshi_2290 at 2420.243 kb on + strand, within Dshi_2290 at 2420.354 kb on - strand, within Dshi_2290 at 2420.354 kb on - strand, within Dshi_2290 at 2420.475 kb on + strand, within Dshi_2290 at 2420.518 kb on - strand, within Dshi_2290 at 2420.574 kb on + strand, within Dshi_2290 at 2420.582 kb on - strand, within Dshi_2290 at 2420.623 kb on - strand, within Dshi_2290
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml remove 2,417,328 - -1.2 2,417,334 + -0.1 2,417,402 - Dshi_2288 0.15 +1.3 2,417,420 - Dshi_2288 0.17 -0.8 2,417,427 - Dshi_2288 0.17 -3.2 2,417,499 + Dshi_2288 0.25 +1.1 2,417,524 + Dshi_2288 0.27 +1.5 2,417,531 - Dshi_2288 0.28 -0.7 2,417,532 - Dshi_2288 0.28 +1.5 2,417,542 - Dshi_2288 0.29 -0.3 2,417,560 - Dshi_2288 0.31 -0.9 2,417,584 - Dshi_2288 0.33 -2.6 2,417,594 - Dshi_2288 0.34 -0.6 2,417,596 + Dshi_2288 0.34 +1.4 2,417,596 + Dshi_2288 0.34 +0.9 2,417,596 + Dshi_2288 0.34 +3.4 2,417,715 - Dshi_2288 0.46 +1.6 2,417,744 - Dshi_2288 0.49 +0.2 2,417,744 - Dshi_2288 0.49 +0.3 2,417,759 + Dshi_2288 0.51 -1.6 2,417,767 - Dshi_2288 0.52 +1.5 2,417,812 + Dshi_2288 0.56 -0.4 2,417,836 - Dshi_2288 0.59 +0.5 2,417,892 + Dshi_2288 0.64 -0.8 2,417,909 + Dshi_2288 0.66 -2.3 2,417,946 + Dshi_2288 0.70 +1.3 2,417,957 + Dshi_2288 0.71 +0.2 2,417,982 + Dshi_2288 0.73 +0.9 2,417,985 - Dshi_2288 0.74 -2.9 2,417,985 - Dshi_2288 0.74 +0.5 2,418,000 + Dshi_2288 0.75 -0.4 2,418,008 - Dshi_2288 0.76 +0.8 2,418,064 + Dshi_2288 0.81 +0.1 2,418,177 + -0.1 2,418,273 + -3.9 2,418,295 - -1.0 2,418,300 - +0.1 2,418,317 + +1.6 2,418,325 - -1.5 2,418,408 - -0.9 2,418,432 + Dshi_2289 0.11 -0.4 2,418,440 - Dshi_2289 0.12 -0.8 2,418,470 + Dshi_2289 0.14 +2.3 2,418,543 + Dshi_2289 0.19 -1.5 2,418,549 + Dshi_2289 0.20 -1.5 2,418,549 + Dshi_2289 0.20 -0.0 2,418,571 + Dshi_2289 0.21 +3.5 2,418,615 - Dshi_2289 0.25 +0.2 2,418,623 + Dshi_2289 0.25 -1.7 2,418,851 - Dshi_2289 0.42 +3.2 2,418,856 - Dshi_2289 0.42 -0.6 2,418,900 + Dshi_2289 0.45 -2.6 2,418,937 - Dshi_2289 0.48 +0.4 2,418,937 - Dshi_2289 0.48 +1.6 2,418,937 - Dshi_2289 0.48 -0.6 2,419,075 + Dshi_2289 0.58 -1.2 2,419,095 + Dshi_2289 0.60 -1.8 2,419,137 + Dshi_2289 0.63 +2.5 2,419,145 - Dshi_2289 0.63 -1.8 2,419,180 + Dshi_2289 0.66 -0.2 2,419,181 - Dshi_2289 0.66 -0.3 2,419,210 - Dshi_2289 0.68 +0.5 2,419,211 - Dshi_2289 0.68 -1.0 2,419,244 - Dshi_2289 0.70 +1.3 2,419,318 - Dshi_2289 0.76 -1.4 2,419,404 + Dshi_2289 0.82 -0.6 2,419,406 + Dshi_2289 0.82 -1.1 2,419,414 - Dshi_2289 0.83 -0.3 2,419,414 - Dshi_2289 0.83 -2.3 2,419,414 - Dshi_2289 0.83 -1.2 2,419,452 + Dshi_2289 0.86 +0.5 2,419,454 + Dshi_2289 0.86 +1.3 2,419,494 + Dshi_2289 0.89 +0.1 2,419,530 + -2.1 2,419,722 - -1.5 2,419,754 - -4.0 2,419,754 - -2.4 2,419,770 - -0.1 2,419,799 - Dshi_2290 0.11 -1.5 2,419,802 + Dshi_2290 0.11 +0.1 2,419,827 - Dshi_2290 0.13 -1.4 2,419,827 - Dshi_2290 0.13 -2.6 2,419,849 + Dshi_2290 0.15 -0.9 2,419,884 + Dshi_2290 0.17 +0.8 2,419,978 - Dshi_2290 0.25 -0.8 2,419,978 - Dshi_2290 0.25 -1.2 2,420,015 + Dshi_2290 0.28 -2.2 2,420,075 + Dshi_2290 0.32 +1.7 2,420,110 - Dshi_2290 0.35 +0.5 2,420,215 + Dshi_2290 0.43 -1.3 2,420,243 + Dshi_2290 0.45 -0.3 2,420,354 - Dshi_2290 0.54 -1.7 2,420,354 - Dshi_2290 0.54 +0.1 2,420,475 + Dshi_2290 0.63 +1.1 2,420,518 - Dshi_2290 0.66 -2.9 2,420,574 + Dshi_2290 0.71 -3.3 2,420,582 - Dshi_2290 0.71 +1.8 2,420,623 - Dshi_2290 0.74 +2.2
Or see this region's nucleotide sequence