Experiment: m.b. Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2282 and Dshi_2283 are separated by 211 nucleotides Dshi_2283 and Dshi_2284 are separated by 69 nucleotides
Dshi_2282: Dshi_2282 - transcriptional regulator, AraC family (RefSeq), at 2,409,776 to 2,410,660
_2282
Dshi_2283: Dshi_2283 - monooxygenase (RefSeq), at 2,410,872 to 2,412,536
_2283
Dshi_2284: Dshi_2284 - beta-lactamase (RefSeq), at 2,412,606 to 2,413,793
_2284
Position (kb)
2410
2411
2412
2413 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2409.908 kb on + strand, within Dshi_2282 at 2409.929 kb on - strand, within Dshi_2282 at 2409.929 kb on - strand, within Dshi_2282 at 2409.943 kb on + strand, within Dshi_2282 at 2409.951 kb on - strand, within Dshi_2282 at 2409.956 kb on + strand, within Dshi_2282 at 2410.019 kb on + strand, within Dshi_2282 at 2410.032 kb on - strand, within Dshi_2282 at 2410.127 kb on - strand, within Dshi_2282 at 2410.129 kb on - strand, within Dshi_2282 at 2410.129 kb on - strand, within Dshi_2282 at 2410.178 kb on - strand, within Dshi_2282 at 2410.224 kb on - strand, within Dshi_2282 at 2410.232 kb on - strand, within Dshi_2282 at 2410.239 kb on + strand, within Dshi_2282 at 2410.243 kb on + strand, within Dshi_2282 at 2410.339 kb on + strand, within Dshi_2282 at 2410.402 kb on + strand, within Dshi_2282 at 2410.409 kb on + strand, within Dshi_2282 at 2410.416 kb on - strand, within Dshi_2282 at 2410.475 kb on - strand, within Dshi_2282 at 2410.489 kb on - strand, within Dshi_2282 at 2410.489 kb on - strand, within Dshi_2282 at 2410.489 kb on - strand, within Dshi_2282 at 2410.505 kb on + strand, within Dshi_2282 at 2410.507 kb on + strand, within Dshi_2282 at 2410.588 kb on + strand at 2410.716 kb on - strand at 2410.724 kb on - strand at 2410.769 kb on + strand at 2410.786 kb on + strand at 2410.861 kb on + strand at 2410.882 kb on + strand at 2410.935 kb on + strand at 2410.939 kb on - strand at 2410.989 kb on - strand at 2410.989 kb on - strand at 2410.995 kb on - strand at 2411.000 kb on + strand at 2411.024 kb on + strand at 2411.025 kb on + strand at 2411.075 kb on + strand, within Dshi_2283 at 2411.075 kb on + strand, within Dshi_2283 at 2411.086 kb on + strand, within Dshi_2283 at 2411.116 kb on - strand, within Dshi_2283 at 2411.126 kb on - strand, within Dshi_2283 at 2411.126 kb on - strand, within Dshi_2283 at 2411.157 kb on + strand, within Dshi_2283 at 2411.165 kb on - strand, within Dshi_2283 at 2411.165 kb on - strand, within Dshi_2283 at 2411.225 kb on + strand, within Dshi_2283 at 2411.275 kb on - strand, within Dshi_2283 at 2411.282 kb on + strand, within Dshi_2283 at 2411.317 kb on - strand, within Dshi_2283 at 2411.353 kb on + strand, within Dshi_2283 at 2411.401 kb on + strand, within Dshi_2283 at 2411.401 kb on + strand, within Dshi_2283 at 2411.409 kb on - strand, within Dshi_2283 at 2411.452 kb on - strand, within Dshi_2283 at 2411.473 kb on - strand, within Dshi_2283 at 2411.475 kb on + strand, within Dshi_2283 at 2411.475 kb on + strand, within Dshi_2283 at 2411.475 kb on + strand, within Dshi_2283 at 2411.483 kb on - strand, within Dshi_2283 at 2411.510 kb on - strand, within Dshi_2283 at 2411.541 kb on - strand, within Dshi_2283 at 2411.593 kb on + strand, within Dshi_2283 at 2411.611 kb on - strand, within Dshi_2283 at 2411.611 kb on - strand, within Dshi_2283 at 2411.634 kb on + strand, within Dshi_2283 at 2411.657 kb on + strand, within Dshi_2283 at 2411.657 kb on + strand, within Dshi_2283 at 2411.724 kb on + strand, within Dshi_2283 at 2411.724 kb on + strand, within Dshi_2283 at 2411.728 kb on + strand, within Dshi_2283 at 2411.771 kb on + strand, within Dshi_2283 at 2411.773 kb on + strand, within Dshi_2283 at 2411.776 kb on + strand, within Dshi_2283 at 2411.819 kb on + strand, within Dshi_2283 at 2411.819 kb on + strand, within Dshi_2283 at 2411.827 kb on + strand, within Dshi_2283 at 2411.827 kb on - strand, within Dshi_2283 at 2411.827 kb on - strand, within Dshi_2283 at 2411.922 kb on - strand, within Dshi_2283 at 2411.927 kb on - strand, within Dshi_2283 at 2411.930 kb on - strand, within Dshi_2283 at 2411.933 kb on + strand, within Dshi_2283 at 2411.933 kb on + strand, within Dshi_2283 at 2411.941 kb on - strand, within Dshi_2283 at 2411.962 kb on - strand, within Dshi_2283 at 2411.994 kb on - strand, within Dshi_2283 at 2412.009 kb on + strand, within Dshi_2283 at 2412.055 kb on + strand, within Dshi_2283 at 2412.138 kb on - strand, within Dshi_2283 at 2412.140 kb on + strand, within Dshi_2283 at 2412.173 kb on + strand, within Dshi_2283 at 2412.229 kb on + strand, within Dshi_2283 at 2412.294 kb on - strand, within Dshi_2283 at 2412.314 kb on + strand, within Dshi_2283 at 2412.436 kb on - strand at 2412.444 kb on + strand at 2412.450 kb on - strand at 2412.466 kb on - strand at 2412.493 kb on - strand at 2412.496 kb on + strand at 2412.512 kb on + strand at 2412.520 kb on - strand at 2412.531 kb on + strand at 2412.543 kb on - strand at 2412.557 kb on + strand at 2412.587 kb on - strand at 2412.652 kb on + strand at 2412.652 kb on - strand at 2412.653 kb on - strand at 2412.660 kb on - strand at 2412.660 kb on - strand at 2412.660 kb on - strand at 2412.710 kb on + strand at 2412.723 kb on + strand at 2412.729 kb on - strand, within Dshi_2284 at 2412.753 kb on + strand, within Dshi_2284 at 2412.759 kb on + strand, within Dshi_2284 at 2412.767 kb on - strand, within Dshi_2284 at 2412.797 kb on + strand, within Dshi_2284 at 2412.849 kb on - strand, within Dshi_2284 at 2413.014 kb on + strand, within Dshi_2284 at 2413.188 kb on + strand, within Dshi_2284 at 2413.303 kb on + strand, within Dshi_2284 at 2413.351 kb on - strand, within Dshi_2284 at 2413.357 kb on + strand, within Dshi_2284 at 2413.357 kb on + strand, within Dshi_2284 at 2413.361 kb on + strand, within Dshi_2284 at 2413.522 kb on - strand, within Dshi_2284 at 2413.529 kb on - strand, within Dshi_2284
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml remove 2,409,908 + Dshi_2282 0.15 -0.8 2,409,929 - Dshi_2282 0.17 +0.6 2,409,929 - Dshi_2282 0.17 -0.1 2,409,943 + Dshi_2282 0.19 -0.3 2,409,951 - Dshi_2282 0.20 -4.4 2,409,956 + Dshi_2282 0.20 -0.6 2,410,019 + Dshi_2282 0.27 +0.8 2,410,032 - Dshi_2282 0.29 -0.9 2,410,127 - Dshi_2282 0.40 +0.5 2,410,129 - Dshi_2282 0.40 +0.3 2,410,129 - Dshi_2282 0.40 +0.3 2,410,178 - Dshi_2282 0.45 +0.4 2,410,224 - Dshi_2282 0.51 -0.7 2,410,232 - Dshi_2282 0.52 -1.5 2,410,239 + Dshi_2282 0.52 -0.5 2,410,243 + Dshi_2282 0.53 +0.4 2,410,339 + Dshi_2282 0.64 -2.1 2,410,402 + Dshi_2282 0.71 +1.0 2,410,409 + Dshi_2282 0.72 -1.2 2,410,416 - Dshi_2282 0.72 +0.9 2,410,475 - Dshi_2282 0.79 +0.5 2,410,489 - Dshi_2282 0.81 +0.5 2,410,489 - Dshi_2282 0.81 -2.9 2,410,489 - Dshi_2282 0.81 -0.2 2,410,505 + Dshi_2282 0.82 -0.2 2,410,507 + Dshi_2282 0.83 -0.3 2,410,588 + -0.1 2,410,716 - -1.0 2,410,724 - +3.6 2,410,769 + +0.6 2,410,786 + -0.4 2,410,861 + -2.9 2,410,882 + +1.5 2,410,935 + +1.3 2,410,939 - +0.8 2,410,989 - -1.9 2,410,989 - +1.1 2,410,995 - -1.2 2,411,000 + +1.2 2,411,024 + +0.3 2,411,025 + +1.5 2,411,075 + Dshi_2283 0.12 -2.1 2,411,075 + Dshi_2283 0.12 +1.7 2,411,086 + Dshi_2283 0.13 -0.8 2,411,116 - Dshi_2283 0.15 -0.9 2,411,126 - Dshi_2283 0.15 +1.5 2,411,126 - Dshi_2283 0.15 -0.2 2,411,157 + Dshi_2283 0.17 +0.5 2,411,165 - Dshi_2283 0.18 -0.5 2,411,165 - Dshi_2283 0.18 +0.5 2,411,225 + Dshi_2283 0.21 -0.1 2,411,275 - Dshi_2283 0.24 +2.3 2,411,282 + Dshi_2283 0.25 -0.7 2,411,317 - Dshi_2283 0.27 -0.2 2,411,353 + Dshi_2283 0.29 +0.2 2,411,401 + Dshi_2283 0.32 -1.3 2,411,401 + Dshi_2283 0.32 -2.1 2,411,409 - Dshi_2283 0.32 +1.8 2,411,452 - Dshi_2283 0.35 +0.4 2,411,473 - Dshi_2283 0.36 -0.2 2,411,475 + Dshi_2283 0.36 -0.1 2,411,475 + Dshi_2283 0.36 +0.9 2,411,475 + Dshi_2283 0.36 +0.5 2,411,483 - Dshi_2283 0.37 +0.5 2,411,510 - Dshi_2283 0.38 +0.9 2,411,541 - Dshi_2283 0.40 +2.1 2,411,593 + Dshi_2283 0.43 -3.6 2,411,611 - Dshi_2283 0.44 -0.2 2,411,611 - Dshi_2283 0.44 -1.5 2,411,634 + Dshi_2283 0.46 -0.7 2,411,657 + Dshi_2283 0.47 +0.1 2,411,657 + Dshi_2283 0.47 +0.1 2,411,724 + Dshi_2283 0.51 +1.6 2,411,724 + Dshi_2283 0.51 +0.1 2,411,728 + Dshi_2283 0.51 -2.9 2,411,771 + Dshi_2283 0.54 -2.9 2,411,773 + Dshi_2283 0.54 -1.0 2,411,776 + Dshi_2283 0.54 +1.0 2,411,819 + Dshi_2283 0.57 +0.1 2,411,819 + Dshi_2283 0.57 +0.5 2,411,827 + Dshi_2283 0.57 +1.0 2,411,827 - Dshi_2283 0.57 -0.3 2,411,827 - Dshi_2283 0.57 -0.1 2,411,922 - Dshi_2283 0.63 -0.9 2,411,927 - Dshi_2283 0.63 -0.3 2,411,930 - Dshi_2283 0.64 -0.8 2,411,933 + Dshi_2283 0.64 -0.1 2,411,933 + Dshi_2283 0.64 +0.0 2,411,941 - Dshi_2283 0.64 -0.3 2,411,962 - Dshi_2283 0.65 -0.2 2,411,994 - Dshi_2283 0.67 -3.7 2,412,009 + Dshi_2283 0.68 +0.6 2,412,055 + Dshi_2283 0.71 +0.2 2,412,138 - Dshi_2283 0.76 -0.9 2,412,140 + Dshi_2283 0.76 +0.6 2,412,173 + Dshi_2283 0.78 +3.5 2,412,229 + Dshi_2283 0.82 -2.1 2,412,294 - Dshi_2283 0.85 +0.1 2,412,314 + Dshi_2283 0.87 -0.7 2,412,436 - +1.6 2,412,444 + +0.8 2,412,450 - +0.1 2,412,466 - +1.1 2,412,493 - +2.4 2,412,496 + -0.3 2,412,512 + -1.1 2,412,520 - +0.3 2,412,531 + +1.1 2,412,543 - -0.3 2,412,557 + +0.3 2,412,587 - -0.3 2,412,652 + +0.5 2,412,652 - +0.4 2,412,653 - -0.9 2,412,660 - +0.8 2,412,660 - -1.8 2,412,660 - +1.5 2,412,710 + -2.8 2,412,723 + +2.4 2,412,729 - Dshi_2284 0.10 -1.1 2,412,753 + Dshi_2284 0.12 -1.3 2,412,759 + Dshi_2284 0.13 -2.6 2,412,767 - Dshi_2284 0.14 -2.2 2,412,797 + Dshi_2284 0.16 -0.6 2,412,849 - Dshi_2284 0.20 -2.0 2,413,014 + Dshi_2284 0.34 -1.8 2,413,188 + Dshi_2284 0.49 -2.6 2,413,303 + Dshi_2284 0.59 +1.5 2,413,351 - Dshi_2284 0.63 +1.6 2,413,357 + Dshi_2284 0.63 -1.4 2,413,357 + Dshi_2284 0.63 +0.0 2,413,361 + Dshi_2284 0.64 -0.7 2,413,522 - Dshi_2284 0.77 -3.7 2,413,529 - Dshi_2284 0.78 +0.3
Or see this region's nucleotide sequence