Experiment: m.b. Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2172 and Dshi_2173 overlap by 4 nucleotides Dshi_2173 and Dshi_2174 are separated by 154 nucleotides Dshi_2174 and Dshi_2175 overlap by 4 nucleotides Dshi_2175 and Dshi_2176 are separated by 12 nucleotides Dshi_2176 and Dshi_2177 overlap by 10 nucleotides
Dshi_2172: Dshi_2172 - phage head-tail adaptor, putative (RefSeq), at 2,300,318 to 2,300,656
_2172
Dshi_2173: Dshi_2173 - hypothetical protein (RefSeq), at 2,300,653 to 2,301,243
_2173
Dshi_2174: Dshi_2174 - phage major capsid protein, HK97 family (RefSeq), at 2,301,398 to 2,302,615
_2174
Dshi_2175: Dshi_2175 - phage prohead protease, HK97 family (RefSeq), at 2,302,612 to 2,303,229
_2175
Dshi_2176: Dshi_2176 - hypothetical protein (RefSeq), at 2,303,242 to 2,303,508
_2176
Dshi_2177: Dshi_2177 - phage portal protein, HK97 family (RefSeq), at 2,303,499 to 2,304,689
_2177
Position (kb)
2301
2302
2303 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2300.398 kb on - strand, within Dshi_2172 at 2300.433 kb on - strand, within Dshi_2172 at 2300.458 kb on - strand, within Dshi_2172 at 2300.553 kb on - strand, within Dshi_2172 at 2300.569 kb on + strand, within Dshi_2172 at 2300.603 kb on + strand, within Dshi_2172 at 2300.752 kb on - strand, within Dshi_2173 at 2300.781 kb on - strand, within Dshi_2173 at 2300.788 kb on + strand, within Dshi_2173 at 2300.805 kb on + strand, within Dshi_2173 at 2300.805 kb on + strand, within Dshi_2173 at 2300.813 kb on - strand, within Dshi_2173 at 2300.927 kb on - strand, within Dshi_2173 at 2301.027 kb on + strand, within Dshi_2173 at 2301.031 kb on + strand, within Dshi_2173 at 2301.040 kb on + strand, within Dshi_2173 at 2301.045 kb on + strand, within Dshi_2173 at 2301.050 kb on + strand, within Dshi_2173 at 2301.050 kb on + strand, within Dshi_2173 at 2301.058 kb on - strand, within Dshi_2173 at 2301.073 kb on + strand, within Dshi_2173 at 2301.081 kb on - strand, within Dshi_2173 at 2301.083 kb on + strand, within Dshi_2173 at 2301.208 kb on + strand at 2301.208 kb on + strand at 2301.224 kb on - strand at 2301.252 kb on + strand at 2301.300 kb on + strand at 2301.303 kb on - strand at 2301.309 kb on + strand at 2301.343 kb on + strand at 2301.382 kb on - strand at 2301.395 kb on + strand at 2301.460 kb on + strand at 2301.481 kb on + strand at 2301.515 kb on + strand at 2301.532 kb on + strand, within Dshi_2174 at 2301.547 kb on - strand, within Dshi_2174 at 2301.574 kb on - strand, within Dshi_2174 at 2301.619 kb on - strand, within Dshi_2174 at 2301.634 kb on - strand, within Dshi_2174 at 2301.698 kb on - strand, within Dshi_2174 at 2301.725 kb on - strand, within Dshi_2174 at 2301.768 kb on + strand, within Dshi_2174 at 2301.817 kb on - strand, within Dshi_2174 at 2301.850 kb on - strand, within Dshi_2174 at 2301.854 kb on - strand, within Dshi_2174 at 2301.896 kb on + strand, within Dshi_2174 at 2301.898 kb on - strand, within Dshi_2174 at 2302.000 kb on - strand, within Dshi_2174 at 2302.034 kb on - strand, within Dshi_2174 at 2302.034 kb on - strand, within Dshi_2174 at 2302.091 kb on - strand, within Dshi_2174 at 2302.153 kb on + strand, within Dshi_2174 at 2302.161 kb on - strand, within Dshi_2174 at 2302.233 kb on + strand, within Dshi_2174 at 2302.241 kb on + strand, within Dshi_2174 at 2302.314 kb on - strand, within Dshi_2174 at 2302.389 kb on + strand, within Dshi_2174 at 2302.434 kb on + strand, within Dshi_2174 at 2302.442 kb on - strand, within Dshi_2174 at 2302.442 kb on - strand, within Dshi_2174 at 2302.442 kb on - strand, within Dshi_2174 at 2302.484 kb on + strand, within Dshi_2174 at 2302.492 kb on - strand, within Dshi_2174 at 2302.492 kb on - strand, within Dshi_2174 at 2302.527 kb on - strand at 2302.599 kb on - strand at 2302.651 kb on - strand at 2302.670 kb on - strand at 2302.673 kb on + strand at 2302.777 kb on - strand, within Dshi_2175 at 2302.943 kb on + strand, within Dshi_2175 at 2302.981 kb on + strand, within Dshi_2175 at 2302.986 kb on + strand, within Dshi_2175 at 2303.106 kb on + strand, within Dshi_2175 at 2303.114 kb on - strand, within Dshi_2175 at 2303.118 kb on - strand, within Dshi_2175 at 2303.160 kb on - strand, within Dshi_2175 at 2303.195 kb on + strand at 2303.293 kb on - strand, within Dshi_2176 at 2303.439 kb on - strand, within Dshi_2176 at 2303.477 kb on + strand, within Dshi_2176 at 2303.498 kb on + strand at 2303.498 kb on + strand at 2303.549 kb on - strand at 2303.588 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml remove 2,300,398 - Dshi_2172 0.24 -0.7 2,300,433 - Dshi_2172 0.34 -1.1 2,300,458 - Dshi_2172 0.41 -1.2 2,300,553 - Dshi_2172 0.69 +0.6 2,300,569 + Dshi_2172 0.74 +1.2 2,300,603 + Dshi_2172 0.84 -1.2 2,300,752 - Dshi_2173 0.17 -0.4 2,300,781 - Dshi_2173 0.22 +4.0 2,300,788 + Dshi_2173 0.23 +1.1 2,300,805 + Dshi_2173 0.26 -0.8 2,300,805 + Dshi_2173 0.26 -0.4 2,300,813 - Dshi_2173 0.27 -2.6 2,300,927 - Dshi_2173 0.46 -0.2 2,301,027 + Dshi_2173 0.63 -0.0 2,301,031 + Dshi_2173 0.64 -2.8 2,301,040 + Dshi_2173 0.65 -0.4 2,301,045 + Dshi_2173 0.66 +1.2 2,301,050 + Dshi_2173 0.67 -0.5 2,301,050 + Dshi_2173 0.67 -0.2 2,301,058 - Dshi_2173 0.69 -3.1 2,301,073 + Dshi_2173 0.71 -4.3 2,301,081 - Dshi_2173 0.72 -1.2 2,301,083 + Dshi_2173 0.73 +1.4 2,301,208 + +2.6 2,301,208 + +1.7 2,301,224 - -0.8 2,301,252 + +0.2 2,301,300 + +0.2 2,301,303 - -0.8 2,301,309 + -3.2 2,301,343 + -1.6 2,301,382 - +0.2 2,301,395 + +0.6 2,301,460 + +3.1 2,301,481 + -0.1 2,301,515 + -0.6 2,301,532 + Dshi_2174 0.11 -1.4 2,301,547 - Dshi_2174 0.12 +0.3 2,301,574 - Dshi_2174 0.14 -0.3 2,301,619 - Dshi_2174 0.18 -0.0 2,301,634 - Dshi_2174 0.19 -0.4 2,301,698 - Dshi_2174 0.25 -0.2 2,301,725 - Dshi_2174 0.27 -0.5 2,301,768 + Dshi_2174 0.30 -0.4 2,301,817 - Dshi_2174 0.34 -1.8 2,301,850 - Dshi_2174 0.37 -1.6 2,301,854 - Dshi_2174 0.37 -2.0 2,301,896 + Dshi_2174 0.41 +2.1 2,301,898 - Dshi_2174 0.41 -1.2 2,302,000 - Dshi_2174 0.49 -0.5 2,302,034 - Dshi_2174 0.52 +2.0 2,302,034 - Dshi_2174 0.52 -1.5 2,302,091 - Dshi_2174 0.57 -1.0 2,302,153 + Dshi_2174 0.62 +0.0 2,302,161 - Dshi_2174 0.63 -2.6 2,302,233 + Dshi_2174 0.69 -0.7 2,302,241 + Dshi_2174 0.69 -0.8 2,302,314 - Dshi_2174 0.75 +0.1 2,302,389 + Dshi_2174 0.81 -0.2 2,302,434 + Dshi_2174 0.85 -1.2 2,302,442 - Dshi_2174 0.86 -0.6 2,302,442 - Dshi_2174 0.86 -1.5 2,302,442 - Dshi_2174 0.86 +0.7 2,302,484 + Dshi_2174 0.89 +0.9 2,302,492 - Dshi_2174 0.90 -1.4 2,302,492 - Dshi_2174 0.90 -2.3 2,302,527 - -1.9 2,302,599 - -2.0 2,302,651 - -1.4 2,302,670 - +0.6 2,302,673 + -1.2 2,302,777 - Dshi_2175 0.27 +2.1 2,302,943 + Dshi_2175 0.54 +0.3 2,302,981 + Dshi_2175 0.60 +0.6 2,302,986 + Dshi_2175 0.61 -3.8 2,303,106 + Dshi_2175 0.80 -2.3 2,303,114 - Dshi_2175 0.81 -0.3 2,303,118 - Dshi_2175 0.82 -1.7 2,303,160 - Dshi_2175 0.89 +0.7 2,303,195 + -2.4 2,303,293 - Dshi_2176 0.19 +1.2 2,303,439 - Dshi_2176 0.74 +1.1 2,303,477 + Dshi_2176 0.88 +0.3 2,303,498 + +2.1 2,303,498 + -2.8 2,303,549 - -0.8 2,303,588 - -1.8
Or see this region's nucleotide sequence