Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2072

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2070 and Dshi_2071 are separated by 40 nucleotidesDshi_2071 and Dshi_2072 are separated by 14 nucleotidesDshi_2072 and Dshi_2073 are separated by 444 nucleotides Dshi_2070: Dshi_2070 - Glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 2,190,630 to 2,191,025 _2070 Dshi_2071: Dshi_2071 - hypothetical protein (RefSeq), at 2,191,066 to 2,191,590 _2071 Dshi_2072: Dshi_2072 - Gluconate 2-dehydrogenase (acceptor) (RefSeq), at 2,191,605 to 2,193,176 _2072 Dshi_2073: Dshi_2073 - hypothetical protein (RefSeq), at 2,193,621 to 2,194,550 _2073 Position (kb) 2191 2192 2193 2194Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2190.632 kb on + strandat 2190.635 kb on - strandat 2190.670 kb on + strand, within Dshi_2070at 2190.785 kb on + strand, within Dshi_2070at 2190.810 kb on + strand, within Dshi_2070at 2190.895 kb on - strand, within Dshi_2070at 2190.901 kb on + strand, within Dshi_2070at 2190.988 kb on + strandat 2191.286 kb on - strand, within Dshi_2071at 2191.300 kb on + strand, within Dshi_2071at 2191.407 kb on - strand, within Dshi_2071at 2191.407 kb on - strand, within Dshi_2071at 2191.469 kb on - strand, within Dshi_2071at 2191.493 kb on + strand, within Dshi_2071at 2191.523 kb on - strand, within Dshi_2071at 2191.553 kb on - strandat 2191.584 kb on + strandat 2191.751 kb on - strandat 2191.774 kb on + strand, within Dshi_2072at 2191.818 kb on - strand, within Dshi_2072at 2191.876 kb on - strand, within Dshi_2072at 2191.897 kb on - strand, within Dshi_2072at 2191.902 kb on - strand, within Dshi_2072at 2191.944 kb on + strand, within Dshi_2072at 2191.952 kb on - strand, within Dshi_2072at 2192.001 kb on - strand, within Dshi_2072at 2192.028 kb on + strand, within Dshi_2072at 2192.067 kb on - strand, within Dshi_2072at 2192.127 kb on + strand, within Dshi_2072at 2192.137 kb on - strand, within Dshi_2072at 2192.148 kb on + strand, within Dshi_2072at 2192.242 kb on + strand, within Dshi_2072at 2192.482 kb on + strand, within Dshi_2072at 2192.531 kb on - strand, within Dshi_2072at 2192.656 kb on + strand, within Dshi_2072at 2192.680 kb on + strand, within Dshi_2072at 2192.763 kb on + strand, within Dshi_2072at 2192.830 kb on - strand, within Dshi_2072at 2192.843 kb on - strand, within Dshi_2072at 2192.861 kb on + strand, within Dshi_2072at 2192.861 kb on + strand, within Dshi_2072at 2193.030 kb on - strandat 2193.051 kb on - strandat 2193.051 kb on - strandat 2193.074 kb on + strandat 2193.117 kb on + strandat 2193.160 kb on - strandat 2193.217 kb on - strandat 2193.251 kb on - strandat 2193.264 kb on + strandat 2193.288 kb on - strandat 2193.306 kb on - strandat 2193.323 kb on + strandat 2193.366 kb on + strandat 2193.445 kb on - strandat 2193.516 kb on + strandat 2193.580 kb on - strandat 2193.607 kb on - strandat 2193.654 kb on - strandat 2193.762 kb on + strand, within Dshi_2073at 2193.852 kb on - strand, within Dshi_2073at 2193.924 kb on - strand, within Dshi_2073at 2193.995 kb on - strand, within Dshi_2073at 2194.080 kb on - strand, within Dshi_2073

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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2,190,632 + -1.3
2,190,635 - -2.3
2,190,670 + Dshi_2070 0.10 +1.2
2,190,785 + Dshi_2070 0.39 -1.3
2,190,810 + Dshi_2070 0.45 -0.8
2,190,895 - Dshi_2070 0.67 -2.2
2,190,901 + Dshi_2070 0.68 -2.3
2,190,988 + -1.3
2,191,286 - Dshi_2071 0.42 -0.8
2,191,300 + Dshi_2071 0.45 -1.3
2,191,407 - Dshi_2071 0.65 +1.6
2,191,407 - Dshi_2071 0.65 +0.9
2,191,469 - Dshi_2071 0.77 -1.3
2,191,493 + Dshi_2071 0.81 -2.1
2,191,523 - Dshi_2071 0.87 -0.7
2,191,553 - +0.2
2,191,584 + -1.1
2,191,751 - +1.0
2,191,774 + Dshi_2072 0.11 -0.5
2,191,818 - Dshi_2072 0.14 -0.3
2,191,876 - Dshi_2072 0.17 +0.5
2,191,897 - Dshi_2072 0.19 +1.3
2,191,902 - Dshi_2072 0.19 +2.2
2,191,944 + Dshi_2072 0.22 +2.2
2,191,952 - Dshi_2072 0.22 +2.3
2,192,001 - Dshi_2072 0.25 -0.2
2,192,028 + Dshi_2072 0.27 -0.8
2,192,067 - Dshi_2072 0.29 +2.7
2,192,127 + Dshi_2072 0.33 +1.1
2,192,137 - Dshi_2072 0.34 +1.5
2,192,148 + Dshi_2072 0.35 +0.8
2,192,242 + Dshi_2072 0.41 -0.5
2,192,482 + Dshi_2072 0.56 -0.8
2,192,531 - Dshi_2072 0.59 -0.5
2,192,656 + Dshi_2072 0.67 -0.5
2,192,680 + Dshi_2072 0.68 -1.1
2,192,763 + Dshi_2072 0.74 +1.0
2,192,830 - Dshi_2072 0.78 +1.2
2,192,843 - Dshi_2072 0.79 -2.5
2,192,861 + Dshi_2072 0.80 -0.7
2,192,861 + Dshi_2072 0.80 -0.8
2,193,030 - +5.1
2,193,051 - -0.8
2,193,051 - +2.1
2,193,074 + -0.3
2,193,117 + -1.1
2,193,160 - -2.1
2,193,217 - -0.3
2,193,251 - -0.3
2,193,264 + -0.9
2,193,288 - +1.2
2,193,306 - +0.5
2,193,323 + +0.7
2,193,366 + +0.2
2,193,445 - -3.4
2,193,516 + +0.4
2,193,580 - -1.9
2,193,607 - -2.9
2,193,654 - -3.3
2,193,762 + Dshi_2073 0.15 -1.1
2,193,852 - Dshi_2073 0.25 +0.0
2,193,924 - Dshi_2073 0.33 +1.3
2,193,995 - Dshi_2073 0.40 -0.3
2,194,080 - Dshi_2073 0.49 +0.7

Or see this region's nucleotide sequence