Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2062

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2061 and Dshi_2062 are separated by 159 nucleotidesDshi_2062 and Dshi_2063 overlap by 4 nucleotidesDshi_2063 and Dshi_2064 are separated by 32 nucleotides Dshi_2061: Dshi_2061 - aspartate kinase (RefSeq), at 2,181,413 to 2,182,651 _2061 Dshi_2062: Dshi_2062 - PTSINtr with GAF domain, PtsP (RefSeq), at 2,182,811 to 2,185,054 _2062 Dshi_2063: Dshi_2063 - von Willebrand factor type A (RefSeq), at 2,185,051 to 2,185,806 _2063 Dshi_2064: Dshi_2064 - GCN5-related N-acetyltransferase (RefSeq), at 2,185,839 to 2,186,339 _2064 Position (kb) 2182 2183 2184 2185 2186Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2182.704 kb on - strandat 2182.977 kb on + strandat 2182.977 kb on + strandat 2182.985 kb on - strandat 2183.000 kb on - strandat 2183.015 kb on - strandat 2183.026 kb on - strandat 2183.264 kb on - strand, within Dshi_2062at 2183.546 kb on - strand, within Dshi_2062at 2183.791 kb on + strand, within Dshi_2062at 2183.992 kb on + strand, within Dshi_2062at 2184.086 kb on - strand, within Dshi_2062at 2184.215 kb on - strand, within Dshi_2062at 2184.281 kb on - strand, within Dshi_2062at 2184.505 kb on - strand, within Dshi_2062at 2184.618 kb on - strand, within Dshi_2062at 2185.107 kb on - strandat 2185.173 kb on - strand, within Dshi_2063at 2185.173 kb on - strand, within Dshi_2063at 2185.192 kb on + strand, within Dshi_2063at 2185.200 kb on - strand, within Dshi_2063at 2185.292 kb on + strand, within Dshi_2063at 2185.697 kb on - strand, within Dshi_2063at 2185.730 kb on + strand, within Dshi_2063at 2185.792 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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2,182,704 - -0.5
2,182,977 + +2.9
2,182,977 + -0.8
2,182,985 - -0.5
2,183,000 - +1.2
2,183,015 - +0.7
2,183,026 - +0.3
2,183,264 - Dshi_2062 0.20 -1.0
2,183,546 - Dshi_2062 0.33 -0.5
2,183,791 + Dshi_2062 0.44 -0.3
2,183,992 + Dshi_2062 0.53 +3.1
2,184,086 - Dshi_2062 0.57 +3.5
2,184,215 - Dshi_2062 0.63 -1.4
2,184,281 - Dshi_2062 0.66 -0.8
2,184,505 - Dshi_2062 0.75 -2.6
2,184,618 - Dshi_2062 0.81 +0.2
2,185,107 - +0.8
2,185,173 - Dshi_2063 0.16 +1.7
2,185,173 - Dshi_2063 0.16 +0.7
2,185,192 + Dshi_2063 0.19 +0.3
2,185,200 - Dshi_2063 0.20 +2.5
2,185,292 + Dshi_2063 0.32 -0.3
2,185,697 - Dshi_2063 0.85 -1.3
2,185,730 + Dshi_2063 0.90 +2.1
2,185,792 - +0.5

Or see this region's nucleotide sequence