Experiment: m.b. Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2045 and Dshi_5006 are separated by 3 nucleotides Dshi_5006 and Dshi_2047 are separated by 0 nucleotides Dshi_2047 and Dshi_2048 are separated by 6 nucleotides
Dshi_2045: Dshi_2045 - thiamine pyrophosphate protein central region (RefSeq), at 2,164,196 to 2,165,974
_2045
Dshi_5006: Dshi_5006 - hypothetical protein (NCBI), at 2,165,978 to 2,167,135
_5006
Dshi_2047: Dshi_2047 - hypothetical protein (RefSeq), at 2,167,136 to 2,167,762
_2047
Dshi_2048: Dshi_2048 - Mammalian cell entry related domain protein (RefSeq), at 2,167,769 to 2,169,508
_2048
Position (kb)
2165
2166
2167
2168 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2166.217 kb on + strand, within Dshi_5006 at 2166.217 kb on + strand, within Dshi_5006 at 2166.339 kb on - strand, within Dshi_5006 at 2166.794 kb on - strand, within Dshi_5006 at 2167.036 kb on - strand at 2167.037 kb on + strand at 2167.181 kb on - strand at 2167.355 kb on - strand, within Dshi_2047 at 2167.472 kb on + strand, within Dshi_2047 at 2167.552 kb on - strand, within Dshi_2047 at 2167.975 kb on - strand, within Dshi_2048 at 2168.095 kb on + strand, within Dshi_2048
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml remove 2,166,217 + Dshi_5006 0.21 -1.0 2,166,217 + Dshi_5006 0.21 -1.9 2,166,339 - Dshi_5006 0.31 +1.7 2,166,794 - Dshi_5006 0.70 -3.7 2,167,036 - -3.0 2,167,037 + +1.3 2,167,181 - -1.1 2,167,355 - Dshi_2047 0.35 -1.9 2,167,472 + Dshi_2047 0.54 -2.0 2,167,552 - Dshi_2047 0.66 -0.9 2,167,975 - Dshi_2048 0.12 -0.4 2,168,095 + Dshi_2048 0.19 -0.0
Or see this region's nucleotide sequence