Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2017

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2015 and Dshi_2016 overlap by 1 nucleotidesDshi_2016 and Dshi_2017 are separated by 0 nucleotidesDshi_2017 and Dshi_2018 are separated by 151 nucleotidesDshi_2018 and Dshi_2019 are separated by 82 nucleotides Dshi_2015: Dshi_2015 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,134,480 to 2,135,361 _2015 Dshi_2016: Dshi_2016 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,135,361 to 2,136,215 _2016 Dshi_2017: Dshi_2017 - ABC transporter related (RefSeq), at 2,136,216 to 2,137,217 _2017 Dshi_2018: Dshi_2018 - phage-related hypothetical protein (RefSeq), at 2,137,369 to 2,137,632 _2018 Dshi_2019: Dshi_2019 - ferredoxin-dependent glutamate synthase (RefSeq), at 2,137,715 to 2,139,322 _2019 Position (kb) 2136 2137 2138Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2135.232 kb on + strand, within Dshi_2015at 2135.237 kb on + strand, within Dshi_2015at 2135.304 kb on + strandat 2135.357 kb on + strandat 2135.376 kb on + strandat 2135.395 kb on + strandat 2135.401 kb on + strandat 2135.421 kb on + strandat 2135.590 kb on + strand, within Dshi_2016at 2135.764 kb on + strand, within Dshi_2016at 2135.808 kb on + strand, within Dshi_2016at 2135.808 kb on + strand, within Dshi_2016at 2135.927 kb on + strand, within Dshi_2016at 2136.048 kb on - strand, within Dshi_2016at 2136.080 kb on + strand, within Dshi_2016at 2136.090 kb on + strand, within Dshi_2016at 2136.108 kb on - strand, within Dshi_2016at 2136.267 kb on - strandat 2136.277 kb on - strandat 2136.283 kb on + strandat 2136.606 kb on + strand, within Dshi_2017at 2136.633 kb on - strand, within Dshi_2017at 2136.650 kb on - strand, within Dshi_2017at 2137.052 kb on + strand, within Dshi_2017at 2137.354 kb on + strandat 2137.399 kb on + strand, within Dshi_2018at 2137.407 kb on - strand, within Dshi_2018at 2137.417 kb on - strand, within Dshi_2018at 2137.461 kb on - strand, within Dshi_2018at 2137.466 kb on - strand, within Dshi_2018at 2137.741 kb on - strandat 2137.828 kb on + strandat 2137.842 kb on - strandat 2137.955 kb on - strand, within Dshi_2019at 2138.077 kb on + strand, within Dshi_2019at 2138.195 kb on - strand, within Dshi_2019

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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2,135,232 + Dshi_2015 0.85 -0.3
2,135,237 + Dshi_2015 0.86 -1.2
2,135,304 + +3.3
2,135,357 + +1.8
2,135,376 + -1.2
2,135,395 + -0.9
2,135,401 + -0.4
2,135,421 + -0.9
2,135,590 + Dshi_2016 0.27 -3.7
2,135,764 + Dshi_2016 0.47 -1.3
2,135,808 + Dshi_2016 0.52 +1.4
2,135,808 + Dshi_2016 0.52 -0.4
2,135,927 + Dshi_2016 0.66 -2.4
2,136,048 - Dshi_2016 0.80 -1.6
2,136,080 + Dshi_2016 0.84 -0.1
2,136,090 + Dshi_2016 0.85 -1.0
2,136,108 - Dshi_2016 0.87 +0.3
2,136,267 - -1.0
2,136,277 - -1.5
2,136,283 + -1.6
2,136,606 + Dshi_2017 0.39 -1.3
2,136,633 - Dshi_2017 0.42 -0.8
2,136,650 - Dshi_2017 0.43 +0.4
2,137,052 + Dshi_2017 0.83 +0.5
2,137,354 + +0.9
2,137,399 + Dshi_2018 0.11 +1.9
2,137,407 - Dshi_2018 0.14 -0.3
2,137,417 - Dshi_2018 0.18 -0.8
2,137,461 - Dshi_2018 0.35 +1.2
2,137,466 - Dshi_2018 0.37 -0.5
2,137,741 - -3.0
2,137,828 + -2.0
2,137,842 - -2.6
2,137,955 - Dshi_2019 0.15 -0.4
2,138,077 + Dshi_2019 0.23 +1.9
2,138,195 - Dshi_2019 0.30 +0.3

Or see this region's nucleotide sequence