Experiment: m.b. Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2001 and Dshi_2002 overlap by 4 nucleotides Dshi_2002 and Dshi_2003 are separated by 466 nucleotides Dshi_2003 and Dshi_2004 overlap by 29 nucleotides
Dshi_2001: Dshi_2001 - ROK family protein (RefSeq), at 2,120,658 to 2,121,902
_2001
Dshi_2002: Dshi_2002 - FG-GAP repeat domain protein (RefSeq), at 2,121,899 to 2,123,377
_2002
Dshi_2003: Dshi_2003 - twin-arginine translocation pathway signal (RefSeq), at 2,123,844 to 2,124,359
_2003
Dshi_2004: Dshi_2004 - Ferric reductase domain protein transmembrane component domain (RefSeq), at 2,124,331 to 2,124,954
_2004
Position (kb)
2121
2122
2123
2124 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2120.913 kb on + strand, within Dshi_2001 at 2120.933 kb on + strand, within Dshi_2001 at 2121.120 kb on + strand, within Dshi_2001 at 2121.170 kb on + strand, within Dshi_2001 at 2121.200 kb on + strand, within Dshi_2001 at 2121.300 kb on - strand, within Dshi_2001 at 2121.335 kb on - strand, within Dshi_2001 at 2121.381 kb on - strand, within Dshi_2001 at 2121.607 kb on - strand, within Dshi_2001 at 2121.668 kb on + strand, within Dshi_2001 at 2121.785 kb on - strand at 2121.790 kb on - strand at 2121.906 kb on + strand at 2121.991 kb on - strand at 2122.285 kb on + strand, within Dshi_2002 at 2122.293 kb on - strand, within Dshi_2002 at 2122.595 kb on - strand, within Dshi_2002 at 2122.645 kb on + strand, within Dshi_2002 at 2122.700 kb on + strand, within Dshi_2002 at 2122.785 kb on + strand, within Dshi_2002 at 2122.793 kb on - strand, within Dshi_2002 at 2122.809 kb on - strand, within Dshi_2002 at 2122.836 kb on + strand, within Dshi_2002 at 2122.846 kb on + strand, within Dshi_2002 at 2122.987 kb on - strand, within Dshi_2002 at 2123.519 kb on - strand at 2123.579 kb on + strand at 2123.692 kb on + strand at 2123.774 kb on + strand at 2123.781 kb on - strand at 2123.827 kb on + strand at 2123.840 kb on - strand at 2123.846 kb on + strand at 2123.874 kb on + strand at 2123.877 kb on - strand at 2124.035 kb on - strand, within Dshi_2003 at 2124.049 kb on - strand, within Dshi_2003 at 2124.248 kb on + strand, within Dshi_2003 at 2124.275 kb on + strand, within Dshi_2003
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml remove 2,120,913 + Dshi_2001 0.20 -1.1 2,120,933 + Dshi_2001 0.22 -0.5 2,121,120 + Dshi_2001 0.37 +3.5 2,121,170 + Dshi_2001 0.41 -2.1 2,121,200 + Dshi_2001 0.44 -1.9 2,121,300 - Dshi_2001 0.52 +0.7 2,121,335 - Dshi_2001 0.54 -0.3 2,121,381 - Dshi_2001 0.58 -0.9 2,121,607 - Dshi_2001 0.76 -0.3 2,121,668 + Dshi_2001 0.81 -0.3 2,121,785 - -0.3 2,121,790 - +0.7 2,121,906 + +0.7 2,121,991 - -0.9 2,122,285 + Dshi_2002 0.26 -3.1 2,122,293 - Dshi_2002 0.27 +0.5 2,122,595 - Dshi_2002 0.47 +0.4 2,122,645 + Dshi_2002 0.50 +0.7 2,122,700 + Dshi_2002 0.54 -1.4 2,122,785 + Dshi_2002 0.60 -0.3 2,122,793 - Dshi_2002 0.60 +0.7 2,122,809 - Dshi_2002 0.62 -0.9 2,122,836 + Dshi_2002 0.63 +0.7 2,122,846 + Dshi_2002 0.64 +0.0 2,122,987 - Dshi_2002 0.74 -1.9 2,123,519 - +0.7 2,123,579 + +0.1 2,123,692 + -0.6 2,123,774 + -2.3 2,123,781 - -1.3 2,123,827 + +3.0 2,123,840 - +0.7 2,123,846 + +0.7 2,123,874 + -0.9 2,123,877 - +0.7 2,124,035 - Dshi_2003 0.37 +2.7 2,124,049 - Dshi_2003 0.40 -0.3 2,124,248 + Dshi_2003 0.78 -3.2 2,124,275 + Dshi_2003 0.84 -0.7
Or see this region's nucleotide sequence