Experiment: m.b. Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1997 and Dshi_1998 overlap by 1 nucleotides Dshi_1998 and Dshi_1999 overlap by 4 nucleotides Dshi_1999 and Dshi_2000 are separated by 117 nucleotides
Dshi_1997: Dshi_1997 - Xylulose kinase (EC 2.7.1.17) (from data) , at 2,115,813 to 2,117,255
_1997
Dshi_1998: Dshi_1998 - ABC transporter related (RefSeq), at 2,117,255 to 2,118,001
_1998
Dshi_1999: Dshi_1999 - inner-membrane translocator (RefSeq), at 2,117,998 to 2,119,305
_1999
Dshi_2000: Dshi_2000 - xylitol ABC transporter, periplasmic substrate-binding protein (from data) , at 2,119,423 to 2,120,445
_2000
Position (kb)
2117
2118
2119
2120 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2117.210 kb on + strand at 2117.230 kb on - strand at 2117.247 kb on + strand at 2117.265 kb on + strand at 2117.342 kb on - strand, within Dshi_1998 at 2117.441 kb on - strand, within Dshi_1998 at 2117.516 kb on - strand, within Dshi_1998 at 2117.525 kb on + strand, within Dshi_1998 at 2117.577 kb on + strand, within Dshi_1998 at 2117.677 kb on - strand, within Dshi_1998 at 2117.768 kb on - strand, within Dshi_1998 at 2117.778 kb on + strand, within Dshi_1998 at 2117.929 kb on + strand at 2117.974 kb on - strand at 2118.060 kb on - strand at 2118.060 kb on - strand at 2118.111 kb on + strand at 2118.303 kb on - strand, within Dshi_1999 at 2118.313 kb on - strand, within Dshi_1999 at 2118.417 kb on - strand, within Dshi_1999 at 2118.481 kb on - strand, within Dshi_1999 at 2118.549 kb on + strand, within Dshi_1999 at 2118.559 kb on + strand, within Dshi_1999 at 2118.637 kb on - strand, within Dshi_1999 at 2118.724 kb on - strand, within Dshi_1999 at 2118.854 kb on - strand, within Dshi_1999 at 2118.870 kb on + strand, within Dshi_1999 at 2119.081 kb on + strand, within Dshi_1999 at 2119.081 kb on + strand, within Dshi_1999 at 2119.136 kb on - strand, within Dshi_1999 at 2119.233 kb on + strand at 2119.324 kb on - strand at 2119.341 kb on - strand at 2119.368 kb on - strand at 2119.648 kb on + strand, within Dshi_2000 at 2119.807 kb on + strand, within Dshi_2000 at 2119.849 kb on - strand, within Dshi_2000 at 2119.864 kb on - strand, within Dshi_2000 at 2119.899 kb on - strand, within Dshi_2000 at 2119.933 kb on - strand, within Dshi_2000 at 2119.991 kb on + strand, within Dshi_2000 at 2120.005 kb on - strand, within Dshi_2000 at 2120.053 kb on + strand, within Dshi_2000 at 2120.152 kb on + strand, within Dshi_2000 at 2120.207 kb on + strand, within Dshi_2000 at 2120.207 kb on + strand, within Dshi_2000 at 2120.285 kb on - strand, within Dshi_2000
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml remove 2,117,210 + -1.1 2,117,230 - +0.1 2,117,247 + -3.0 2,117,265 + -1.1 2,117,342 - Dshi_1998 0.12 +1.7 2,117,441 - Dshi_1998 0.25 +0.7 2,117,516 - Dshi_1998 0.35 -0.3 2,117,525 + Dshi_1998 0.36 +0.7 2,117,577 + Dshi_1998 0.43 -0.8 2,117,677 - Dshi_1998 0.56 +2.7 2,117,768 - Dshi_1998 0.69 -0.6 2,117,778 + Dshi_1998 0.70 +3.0 2,117,929 + +1.7 2,117,974 - +2.3 2,118,060 - -0.5 2,118,060 - +1.3 2,118,111 + -1.3 2,118,303 - Dshi_1999 0.23 -0.4 2,118,313 - Dshi_1999 0.24 -3.2 2,118,417 - Dshi_1999 0.32 +0.5 2,118,481 - Dshi_1999 0.37 -1.3 2,118,549 + Dshi_1999 0.42 +1.9 2,118,559 + Dshi_1999 0.43 +0.4 2,118,637 - Dshi_1999 0.49 +1.9 2,118,724 - Dshi_1999 0.56 -2.0 2,118,854 - Dshi_1999 0.65 +0.7 2,118,870 + Dshi_1999 0.67 +1.1 2,119,081 + Dshi_1999 0.83 +0.7 2,119,081 + Dshi_1999 0.83 +1.7 2,119,136 - Dshi_1999 0.87 -0.6 2,119,233 + -0.9 2,119,324 - +0.7 2,119,341 - +0.7 2,119,368 - -3.6 2,119,648 + Dshi_2000 0.22 -0.9 2,119,807 + Dshi_2000 0.38 -1.6 2,119,849 - Dshi_2000 0.42 -0.3 2,119,864 - Dshi_2000 0.43 +0.1 2,119,899 - Dshi_2000 0.47 +0.7 2,119,933 - Dshi_2000 0.50 +1.7 2,119,991 + Dshi_2000 0.56 -0.3 2,120,005 - Dshi_2000 0.57 -0.1 2,120,053 + Dshi_2000 0.62 -2.3 2,120,152 + Dshi_2000 0.71 -2.5 2,120,207 + Dshi_2000 0.77 +1.3 2,120,207 + Dshi_2000 0.77 -1.3 2,120,285 - Dshi_2000 0.84 -2.0
Or see this region's nucleotide sequence