Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1543

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1541 and Dshi_1542 are separated by 64 nucleotidesDshi_1542 and Dshi_1543 are separated by 12 nucleotidesDshi_1543 and Dshi_1544 are separated by 23 nucleotides Dshi_1541: Dshi_1541 - Amidohydrolase 3 (RefSeq), at 1,602,173 to 1,604,119 _1541 Dshi_1542: Dshi_1542 - hypothetical protein (RefSeq), at 1,604,184 to 1,604,711 _1542 Dshi_1543: Dshi_1543 - Patatin (RefSeq), at 1,604,724 to 1,605,764 _1543 Dshi_1544: Dshi_1544 - 3-hydroxybutyrate dehydrogenase (RefSeq), at 1,605,788 to 1,606,561 _1544 Position (kb) 1604 1605 1606Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1603.755 kb on + strand, within Dshi_1541at 1603.976 kb on + strandat 1604.069 kb on + strandat 1604.197 kb on + strandat 1604.272 kb on - strand, within Dshi_1542at 1604.282 kb on - strand, within Dshi_1542at 1604.332 kb on + strand, within Dshi_1542at 1604.488 kb on - strand, within Dshi_1542at 1604.645 kb on + strand, within Dshi_1542at 1604.697 kb on + strandat 1604.707 kb on + strandat 1604.722 kb on + strandat 1604.722 kb on + strandat 1604.762 kb on + strandat 1604.915 kb on - strand, within Dshi_1543at 1605.086 kb on - strand, within Dshi_1543at 1605.108 kb on + strand, within Dshi_1543at 1605.116 kb on - strand, within Dshi_1543at 1605.116 kb on - strand, within Dshi_1543at 1605.148 kb on - strand, within Dshi_1543at 1605.505 kb on - strand, within Dshi_1543at 1605.670 kb on + strandat 1605.695 kb on + strandat 1606.001 kb on + strand, within Dshi_1544at 1606.359 kb on + strand, within Dshi_1544at 1606.427 kb on + strand, within Dshi_1544at 1606.435 kb on - strand, within Dshi_1544at 1606.449 kb on + strand, within Dshi_1544at 1606.465 kb on - strand, within Dshi_1544at 1606.476 kb on - strand, within Dshi_1544at 1606.484 kb on + strandat 1606.509 kb on - strandat 1606.718 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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1,603,755 + Dshi_1541 0.81 -1.4
1,603,976 + +0.2
1,604,069 + -0.4
1,604,197 + -1.0
1,604,272 - Dshi_1542 0.17 -0.4
1,604,282 - Dshi_1542 0.19 +0.5
1,604,332 + Dshi_1542 0.28 -2.6
1,604,488 - Dshi_1542 0.58 +1.6
1,604,645 + Dshi_1542 0.87 -0.6
1,604,697 + -1.3
1,604,707 + -0.7
1,604,722 + -0.6
1,604,722 + +1.2
1,604,762 + -0.6
1,604,915 - Dshi_1543 0.18 -1.1
1,605,086 - Dshi_1543 0.35 -0.2
1,605,108 + Dshi_1543 0.37 -0.4
1,605,116 - Dshi_1543 0.38 -1.1
1,605,116 - Dshi_1543 0.38 +3.4
1,605,148 - Dshi_1543 0.41 -1.2
1,605,505 - Dshi_1543 0.75 +0.6
1,605,670 + -1.3
1,605,695 + +0.4
1,606,001 + Dshi_1544 0.28 -2.9
1,606,359 + Dshi_1544 0.74 -0.3
1,606,427 + Dshi_1544 0.83 -3.8
1,606,435 - Dshi_1544 0.84 -1.0
1,606,449 + Dshi_1544 0.85 +2.3
1,606,465 - Dshi_1544 0.87 -0.8
1,606,476 - Dshi_1544 0.89 -1.0
1,606,484 + -0.4
1,606,509 - +0.9
1,606,718 - -0.6

Or see this region's nucleotide sequence