Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1539
Experiment: m.b. Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Thallium(I) acetate 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,599,136 | + | +2.1 | |||
1,599,887 | + | -0.4 | |||
1,599,965 | - | -0.4 | |||
1,600,180 | + | Dshi_1539 | 0.20 | -2.3 | |
1,600,343 | + | Dshi_1539 | 0.37 | +1.1 | |
1,600,405 | - | Dshi_1539 | 0.43 | -0.7 | |
1,600,649 | + | Dshi_1539 | 0.69 | -1.0 | |
1,600,692 | + | Dshi_1539 | 0.73 | +2.7 | |
1,600,700 | - | Dshi_1539 | 0.74 | +1.6 | |
1,600,878 | - | -3.1 | |||
1,600,998 | - | +0.2 | |||
1,601,092 | + | -0.4 | |||
1,601,242 | + | Dshi_1540 | 0.22 | -2.3 | |
1,601,250 | - | Dshi_1540 | 0.22 | -2.8 | |
1,601,302 | - | Dshi_1540 | 0.27 | +0.6 | |
1,601,389 | + | Dshi_1540 | 0.36 | -1.7 | |
1,601,397 | - | Dshi_1540 | 0.37 | -2.2 | |
1,601,436 | - | Dshi_1540 | 0.40 | -1.8 | |
1,601,545 | + | Dshi_1540 | 0.51 | +0.6 | |
1,601,550 | + | Dshi_1540 | 0.51 | -1.5 | |
1,601,557 | - | Dshi_1540 | 0.52 | -3.7 | |
1,601,595 | + | Dshi_1540 | 0.56 | +0.6 | |
1,601,595 | + | Dshi_1540 | 0.56 | +0.6 | |
1,601,639 | + | Dshi_1540 | 0.60 | +0.6 | |
1,601,686 | + | Dshi_1540 | 0.64 | -2.4 | |
1,601,853 | + | Dshi_1540 | 0.81 | -1.8 |
Or see this region's nucleotide sequence