Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1262

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1261 and Dshi_1262 are separated by 6 nucleotidesDshi_1262 and Dshi_1263 are separated by 4 nucleotides Dshi_1261: Dshi_1261 - sodium/glutamate symporter (RefSeq), at 1,308,092 to 1,309,300 _1261 Dshi_1262: Dshi_1262 - acriflavin resistance protein (RefSeq), at 1,309,307 to 1,312,360 _1262 Dshi_1263: Dshi_1263 - efflux transporter, RND family, MFP subunit (RefSeq), at 1,312,365 to 1,313,612 _1263 Position (kb) 1309 1310 1311 1312 1313Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1308.418 kb on + strand, within Dshi_1261at 1308.666 kb on + strand, within Dshi_1261at 1308.676 kb on - strand, within Dshi_1261at 1308.857 kb on + strand, within Dshi_1261at 1308.902 kb on + strand, within Dshi_1261at 1309.018 kb on - strand, within Dshi_1261at 1309.061 kb on - strand, within Dshi_1261at 1309.126 kb on - strand, within Dshi_1261at 1309.293 kb on + strandat 1309.311 kb on - strandat 1309.648 kb on - strand, within Dshi_1262at 1309.759 kb on + strand, within Dshi_1262at 1309.778 kb on - strand, within Dshi_1262at 1309.784 kb on + strand, within Dshi_1262at 1310.053 kb on - strand, within Dshi_1262at 1310.146 kb on - strand, within Dshi_1262at 1310.168 kb on + strand, within Dshi_1262at 1310.176 kb on - strand, within Dshi_1262at 1310.176 kb on - strand, within Dshi_1262at 1310.179 kb on - strand, within Dshi_1262at 1310.430 kb on - strand, within Dshi_1262at 1310.487 kb on - strand, within Dshi_1262at 1310.811 kb on - strand, within Dshi_1262at 1310.862 kb on - strand, within Dshi_1262at 1310.882 kb on + strand, within Dshi_1262at 1310.905 kb on - strand, within Dshi_1262at 1311.036 kb on + strand, within Dshi_1262at 1311.156 kb on + strand, within Dshi_1262at 1311.399 kb on - strand, within Dshi_1262at 1311.585 kb on + strand, within Dshi_1262at 1311.602 kb on + strand, within Dshi_1262at 1311.692 kb on - strand, within Dshi_1262at 1311.760 kb on + strand, within Dshi_1262at 1311.763 kb on - strand, within Dshi_1262at 1311.819 kb on + strand, within Dshi_1262at 1311.827 kb on - strand, within Dshi_1262at 1311.832 kb on + strand, within Dshi_1262at 1311.976 kb on + strand, within Dshi_1262at 1311.994 kb on + strand, within Dshi_1262at 1312.053 kb on - strand, within Dshi_1262at 1312.157 kb on + strandat 1312.206 kb on + strandat 1312.252 kb on - strandat 1312.331 kb on + strandat 1312.363 kb on - strandat 1312.521 kb on + strand, within Dshi_1263at 1312.671 kb on + strand, within Dshi_1263at 1312.755 kb on + strand, within Dshi_1263at 1312.797 kb on - strand, within Dshi_1263at 1312.867 kb on - strand, within Dshi_1263at 1312.877 kb on + strand, within Dshi_1263at 1312.913 kb on + strand, within Dshi_1263at 1312.966 kb on - strand, within Dshi_1263at 1312.976 kb on + strand, within Dshi_1263at 1313.135 kb on + strand, within Dshi_1263at 1313.205 kb on - strand, within Dshi_1263

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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1,308,418 + Dshi_1261 0.27 -0.0
1,308,666 + Dshi_1261 0.47 -0.4
1,308,676 - Dshi_1261 0.48 +0.3
1,308,857 + Dshi_1261 0.63 +0.5
1,308,902 + Dshi_1261 0.67 -2.2
1,309,018 - Dshi_1261 0.77 -3.2
1,309,061 - Dshi_1261 0.80 -1.1
1,309,126 - Dshi_1261 0.86 -0.2
1,309,293 + -0.1
1,309,311 - -0.0
1,309,648 - Dshi_1262 0.11 +0.6
1,309,759 + Dshi_1262 0.15 -1.4
1,309,778 - Dshi_1262 0.15 +1.9
1,309,784 + Dshi_1262 0.16 -1.2
1,310,053 - Dshi_1262 0.24 -1.0
1,310,146 - Dshi_1262 0.27 -0.4
1,310,168 + Dshi_1262 0.28 -1.2
1,310,176 - Dshi_1262 0.28 -1.0
1,310,176 - Dshi_1262 0.28 +2.0
1,310,179 - Dshi_1262 0.29 +0.8
1,310,430 - Dshi_1262 0.37 -2.4
1,310,487 - Dshi_1262 0.39 +0.3
1,310,811 - Dshi_1262 0.49 +0.4
1,310,862 - Dshi_1262 0.51 -0.8
1,310,882 + Dshi_1262 0.52 -1.4
1,310,905 - Dshi_1262 0.52 +0.9
1,311,036 + Dshi_1262 0.57 -0.8
1,311,156 + Dshi_1262 0.61 -2.1
1,311,399 - Dshi_1262 0.69 +1.4
1,311,585 + Dshi_1262 0.75 -1.8
1,311,602 + Dshi_1262 0.75 -0.4
1,311,692 - Dshi_1262 0.78 -0.5
1,311,760 + Dshi_1262 0.80 +0.1
1,311,763 - Dshi_1262 0.80 +0.2
1,311,819 + Dshi_1262 0.82 +0.6
1,311,827 - Dshi_1262 0.83 -0.6
1,311,832 + Dshi_1262 0.83 -0.2
1,311,976 + Dshi_1262 0.87 -0.9
1,311,994 + Dshi_1262 0.88 -1.9
1,312,053 - Dshi_1262 0.90 -1.1
1,312,157 + -0.4
1,312,206 + -1.6
1,312,252 - +0.1
1,312,331 + +2.0
1,312,363 - +1.1
1,312,521 + Dshi_1263 0.12 -3.6
1,312,671 + Dshi_1263 0.25 -3.0
1,312,755 + Dshi_1263 0.31 -1.0
1,312,797 - Dshi_1263 0.35 -2.4
1,312,867 - Dshi_1263 0.40 -1.6
1,312,877 + Dshi_1263 0.41 -0.0
1,312,913 + Dshi_1263 0.44 +1.6
1,312,966 - Dshi_1263 0.48 -0.7
1,312,976 + Dshi_1263 0.49 +0.7
1,313,135 + Dshi_1263 0.62 +2.2
1,313,205 - Dshi_1263 0.67 +0.6

Or see this region's nucleotide sequence