Experiment: m.b. Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1242 and Dshi_1243 overlap by 4 nucleotides Dshi_1243 and Dshi_1244 overlap by 1 nucleotides Dshi_1244 and Dshi_1245 are separated by 43 nucleotides
Dshi_1242: Dshi_1242 - 2-dehydro-3-deoxygalactonokinase (RefSeq), at 1,288,623 to 1,289,519
_1242
Dshi_1243: Dshi_1243 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,289,516 to 1,290,292
_1243
Dshi_1244: Dshi_1244 - Dihydroxy-acid dehydratase (RefSeq), at 1,290,292 to 1,292,001
_1244
Dshi_1245: Dshi_1245 - glycoside hydrolase family 4 (RefSeq), at 1,292,045 to 1,293,385
_1245
Position (kb)
1290
1291
1292
1293 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1289.674 kb on - strand, within Dshi_1243 at 1289.833 kb on + strand, within Dshi_1243 at 1289.887 kb on + strand, within Dshi_1243 at 1290.110 kb on + strand, within Dshi_1243 at 1290.118 kb on - strand, within Dshi_1243 at 1290.205 kb on + strand, within Dshi_1243 at 1290.208 kb on - strand, within Dshi_1243 at 1290.339 kb on - strand at 1290.380 kb on + strand at 1290.563 kb on + strand, within Dshi_1244 at 1291.182 kb on - strand, within Dshi_1244 at 1291.243 kb on + strand, within Dshi_1244 at 1291.251 kb on - strand, within Dshi_1244 at 1291.274 kb on - strand, within Dshi_1244 at 1291.396 kb on + strand, within Dshi_1244 at 1291.415 kb on + strand, within Dshi_1244 at 1291.433 kb on - strand, within Dshi_1244 at 1291.477 kb on + strand, within Dshi_1244 at 1291.477 kb on + strand, within Dshi_1244 at 1291.633 kb on - strand, within Dshi_1244 at 1291.735 kb on - strand, within Dshi_1244 at 1291.802 kb on - strand, within Dshi_1244 at 1291.859 kb on + strand at 1291.862 kb on - strand at 1291.867 kb on - strand at 1291.997 kb on + strand at 1292.064 kb on - strand at 1292.066 kb on + strand at 1292.081 kb on + strand at 1292.102 kb on - strand at 1292.159 kb on - strand at 1292.224 kb on + strand, within Dshi_1245 at 1292.229 kb on - strand, within Dshi_1245 at 1292.484 kb on + strand, within Dshi_1245 at 1292.517 kb on - strand, within Dshi_1245 at 1292.673 kb on - strand, within Dshi_1245 at 1292.795 kb on - strand, within Dshi_1245 at 1292.906 kb on + strand, within Dshi_1245 at 1293.000 kb on + strand, within Dshi_1245 at 1293.000 kb on + strand, within Dshi_1245 at 1293.000 kb on + strand, within Dshi_1245
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml remove 1,289,674 - Dshi_1243 0.20 -0.7 1,289,833 + Dshi_1243 0.41 -0.2 1,289,887 + Dshi_1243 0.48 +2.8 1,290,110 + Dshi_1243 0.76 -0.7 1,290,118 - Dshi_1243 0.77 +1.0 1,290,205 + Dshi_1243 0.89 +0.9 1,290,208 - Dshi_1243 0.89 +2.1 1,290,339 - +0.7 1,290,380 + +0.0 1,290,563 + Dshi_1244 0.16 +0.2 1,291,182 - Dshi_1244 0.52 +1.5 1,291,243 + Dshi_1244 0.56 -0.5 1,291,251 - Dshi_1244 0.56 -2.2 1,291,274 - Dshi_1244 0.57 +0.7 1,291,396 + Dshi_1244 0.65 +0.8 1,291,415 + Dshi_1244 0.66 -0.2 1,291,433 - Dshi_1244 0.67 -0.5 1,291,477 + Dshi_1244 0.69 +0.3 1,291,477 + Dshi_1244 0.69 -2.6 1,291,633 - Dshi_1244 0.78 -1.2 1,291,735 - Dshi_1244 0.84 -0.3 1,291,802 - Dshi_1244 0.88 -1.8 1,291,859 + +0.0 1,291,862 - -1.7 1,291,867 - +2.5 1,291,997 + -0.7 1,292,064 - +1.1 1,292,066 + -2.2 1,292,081 + +0.2 1,292,102 - -0.9 1,292,159 - +0.7 1,292,224 + Dshi_1245 0.13 -3.4 1,292,229 - Dshi_1245 0.14 -3.4 1,292,484 + Dshi_1245 0.33 -0.1 1,292,517 - Dshi_1245 0.35 +2.1 1,292,673 - Dshi_1245 0.47 +0.3 1,292,795 - Dshi_1245 0.56 +1.4 1,292,906 + Dshi_1245 0.64 -0.7 1,293,000 + Dshi_1245 0.71 -2.5 1,293,000 + Dshi_1245 0.71 -2.3 1,293,000 + Dshi_1245 0.71 -0.4
Or see this region's nucleotide sequence