Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1225

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1223 and Dshi_1224 are separated by 207 nucleotidesDshi_1224 and Dshi_1225 are separated by 10 nucleotidesDshi_1225 and Dshi_1226 are separated by 8 nucleotidesDshi_1226 and Dshi_1227 are separated by 167 nucleotides Dshi_1223: Dshi_1223 - aminopeptidase N (RefSeq), at 1,264,297 to 1,266,852 _1223 Dshi_1224: Dshi_1224 - hypothetical protein (RefSeq), at 1,267,060 to 1,267,575 _1224 Dshi_1225: Dshi_1225 - Deoxyribodipyrimidine photo-lyase (RefSeq), at 1,267,586 to 1,269,130 _1225 Dshi_1226: Dshi_1226 - hypothetical protein (RefSeq), at 1,269,139 to 1,269,306 _1226 Dshi_1227: Dshi_1227 - malate synthase G (RefSeq), at 1,269,474 to 1,271,648 _1227 Position (kb) 1267 1268 1269 1270Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1266.727 kb on - strandat 1266.801 kb on + strandat 1266.809 kb on - strandat 1266.909 kb on + strandat 1267.243 kb on + strand, within Dshi_1224at 1267.266 kb on + strandat 1267.276 kb on + strand, within Dshi_1224at 1267.313 kb on - strand, within Dshi_1224at 1267.365 kb on + strand, within Dshi_1224at 1267.399 kb on - strand, within Dshi_1224at 1267.408 kb on + strand, within Dshi_1224at 1267.859 kb on + strand, within Dshi_1225at 1267.871 kb on - strand, within Dshi_1225at 1267.881 kb on + strand, within Dshi_1225at 1267.901 kb on + strand, within Dshi_1225at 1267.970 kb on - strand, within Dshi_1225at 1268.076 kb on + strand, within Dshi_1225at 1268.115 kb on + strand, within Dshi_1225at 1268.212 kb on + strand, within Dshi_1225at 1268.214 kb on - strand, within Dshi_1225at 1268.341 kb on + strand, within Dshi_1225at 1268.521 kb on + strand, within Dshi_1225at 1268.743 kb on + strand, within Dshi_1225at 1268.959 kb on + strand, within Dshi_1225at 1268.959 kb on + strand, within Dshi_1225at 1268.959 kb on + strand, within Dshi_1225at 1268.959 kb on + strand, within Dshi_1225at 1268.967 kb on - strand, within Dshi_1225at 1269.107 kb on + strandat 1269.127 kb on + strandat 1269.171 kb on - strand, within Dshi_1226at 1269.432 kb on - strandat 1269.476 kb on + strandat 1269.495 kb on + strandat 1269.495 kb on + strandat 1269.503 kb on - strandat 1269.555 kb on + strandat 1269.577 kb on + strandat 1269.586 kb on + strandat 1269.619 kb on + strandat 1269.632 kb on + strandat 1269.645 kb on + strandat 1269.646 kb on - strandat 1269.819 kb on - strand, within Dshi_1227at 1269.937 kb on + strand, within Dshi_1227at 1270.016 kb on + strand, within Dshi_1227at 1270.029 kb on - strand, within Dshi_1227

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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1,266,727 - -0.4
1,266,801 + +3.5
1,266,809 - -1.1
1,266,909 + +1.7
1,267,243 + Dshi_1224 0.35 +1.1
1,267,266 + +0.7
1,267,276 + Dshi_1224 0.42 +0.7
1,267,313 - Dshi_1224 0.49 -3.2
1,267,365 + Dshi_1224 0.59 -2.7
1,267,399 - Dshi_1224 0.66 +0.7
1,267,408 + Dshi_1224 0.67 +0.0
1,267,859 + Dshi_1225 0.18 +0.7
1,267,871 - Dshi_1225 0.18 +0.7
1,267,881 + Dshi_1225 0.19 +2.7
1,267,901 + Dshi_1225 0.20 +0.7
1,267,970 - Dshi_1225 0.25 -0.3
1,268,076 + Dshi_1225 0.32 -0.7
1,268,115 + Dshi_1225 0.34 +0.7
1,268,212 + Dshi_1225 0.41 +1.7
1,268,214 - Dshi_1225 0.41 +0.7
1,268,341 + Dshi_1225 0.49 +0.7
1,268,521 + Dshi_1225 0.61 -0.2
1,268,743 + Dshi_1225 0.75 +1.5
1,268,959 + Dshi_1225 0.89 +2.1
1,268,959 + Dshi_1225 0.89 +0.7
1,268,959 + Dshi_1225 0.89 +2.2
1,268,959 + Dshi_1225 0.89 -1.0
1,268,967 - Dshi_1225 0.89 +0.7
1,269,107 + -0.5
1,269,127 + +2.5
1,269,171 - Dshi_1226 0.19 +2.0
1,269,432 - +0.7
1,269,476 + +0.8
1,269,495 + -0.2
1,269,495 + -0.2
1,269,503 - +3.5
1,269,555 + +0.0
1,269,577 + +0.7
1,269,586 + -0.6
1,269,619 + -0.2
1,269,632 + -0.6
1,269,645 + -0.5
1,269,646 - +0.7
1,269,819 - Dshi_1227 0.16 -0.9
1,269,937 + Dshi_1227 0.21 +0.1
1,270,016 + Dshi_1227 0.25 -2.4
1,270,029 - Dshi_1227 0.26 -0.2

Or see this region's nucleotide sequence