Experiment: m.b. Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1222 and Dshi_1223 are separated by 25 nucleotides Dshi_1223 and Dshi_1224 are separated by 207 nucleotides Dshi_1224 and Dshi_1225 are separated by 10 nucleotides
Dshi_1222: Dshi_1222 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,263,528 to 1,264,271
_1222
Dshi_1223: Dshi_1223 - aminopeptidase N (RefSeq), at 1,264,297 to 1,266,852
_1223
Dshi_1224: Dshi_1224 - hypothetical protein (RefSeq), at 1,267,060 to 1,267,575
_1224
Dshi_1225: Dshi_1225 - Deoxyribodipyrimidine photo-lyase (RefSeq), at 1,267,586 to 1,269,130
_1225
Position (kb)
1264
1265
1266
1267 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1264.029 kb on + strand, within Dshi_1222 at 1264.344 kb on + strand at 1264.356 kb on + strand at 1264.450 kb on + strand at 1264.503 kb on - strand at 1264.610 kb on - strand, within Dshi_1223 at 1264.653 kb on + strand, within Dshi_1223 at 1264.653 kb on + strand, within Dshi_1223 at 1264.790 kb on + strand, within Dshi_1223 at 1264.899 kb on - strand, within Dshi_1223 at 1264.974 kb on - strand, within Dshi_1223 at 1265.034 kb on + strand, within Dshi_1223 at 1265.172 kb on + strand, within Dshi_1223 at 1265.296 kb on + strand, within Dshi_1223 at 1265.353 kb on - strand, within Dshi_1223 at 1265.420 kb on - strand, within Dshi_1223 at 1265.444 kb on + strand, within Dshi_1223 at 1265.537 kb on + strand, within Dshi_1223 at 1265.537 kb on + strand, within Dshi_1223 at 1265.559 kb on + strand, within Dshi_1223 at 1265.609 kb on - strand, within Dshi_1223 at 1265.626 kb on + strand, within Dshi_1223 at 1265.783 kb on + strand, within Dshi_1223 at 1265.901 kb on + strand, within Dshi_1223 at 1265.902 kb on + strand, within Dshi_1223 at 1266.082 kb on - strand, within Dshi_1223 at 1266.186 kb on + strand, within Dshi_1223 at 1266.311 kb on - strand, within Dshi_1223 at 1266.331 kb on - strand, within Dshi_1223 at 1266.337 kb on - strand, within Dshi_1223 at 1266.413 kb on + strand, within Dshi_1223 at 1266.430 kb on - strand, within Dshi_1223 at 1266.475 kb on + strand, within Dshi_1223 at 1266.727 kb on - strand at 1266.801 kb on + strand at 1266.809 kb on - strand at 1266.909 kb on + strand at 1267.243 kb on + strand, within Dshi_1224 at 1267.266 kb on + strand at 1267.276 kb on + strand, within Dshi_1224 at 1267.313 kb on - strand, within Dshi_1224 at 1267.365 kb on + strand, within Dshi_1224 at 1267.399 kb on - strand, within Dshi_1224 at 1267.408 kb on + strand, within Dshi_1224
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml remove 1,264,029 + Dshi_1222 0.67 -0.9 1,264,344 + -1.0 1,264,356 + -0.4 1,264,450 + -0.9 1,264,503 - -0.3 1,264,610 - Dshi_1223 0.12 -1.7 1,264,653 + Dshi_1223 0.14 -2.2 1,264,653 + Dshi_1223 0.14 +0.1 1,264,790 + Dshi_1223 0.19 -2.8 1,264,899 - Dshi_1223 0.24 +0.7 1,264,974 - Dshi_1223 0.26 -1.3 1,265,034 + Dshi_1223 0.29 +0.7 1,265,172 + Dshi_1223 0.34 -3.7 1,265,296 + Dshi_1223 0.39 -0.3 1,265,353 - Dshi_1223 0.41 +2.2 1,265,420 - Dshi_1223 0.44 -0.5 1,265,444 + Dshi_1223 0.45 -0.9 1,265,537 + Dshi_1223 0.49 -1.5 1,265,537 + Dshi_1223 0.49 -1.3 1,265,559 + Dshi_1223 0.49 +0.9 1,265,609 - Dshi_1223 0.51 +0.2 1,265,626 + Dshi_1223 0.52 -1.0 1,265,783 + Dshi_1223 0.58 -0.2 1,265,901 + Dshi_1223 0.63 +0.7 1,265,902 + Dshi_1223 0.63 -3.3 1,266,082 - Dshi_1223 0.70 +0.7 1,266,186 + Dshi_1223 0.74 -0.3 1,266,311 - Dshi_1223 0.79 -0.3 1,266,331 - Dshi_1223 0.80 +2.7 1,266,337 - Dshi_1223 0.80 +0.7 1,266,413 + Dshi_1223 0.83 +1.2 1,266,430 - Dshi_1223 0.83 -1.7 1,266,475 + Dshi_1223 0.85 -0.3 1,266,727 - -0.4 1,266,801 + +3.5 1,266,809 - -1.1 1,266,909 + +1.7 1,267,243 + Dshi_1224 0.35 +1.1 1,267,266 + +0.7 1,267,276 + Dshi_1224 0.42 +0.7 1,267,313 - Dshi_1224 0.49 -3.2 1,267,365 + Dshi_1224 0.59 -2.7 1,267,399 - Dshi_1224 0.66 +0.7 1,267,408 + Dshi_1224 0.67 +0.0
Or see this region's nucleotide sequence