Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1219

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1218 and Dshi_1219 are separated by 12 nucleotidesDshi_1219 and Dshi_1220 are separated by 83 nucleotides Dshi_1218: Dshi_1218 - protein of unknown function DUF112 transmembrane (RefSeq), at 1,258,541 to 1,260,055 _1218 Dshi_1219: Dshi_1219 - hypothetical protein (RefSeq), at 1,260,068 to 1,260,553 _1219 Dshi_1220: Dshi_1220 - hypothetical protein (RefSeq), at 1,260,637 to 1,261,623 _1220 Position (kb) 1260 1261Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1259.211 kb on + strand, within Dshi_1218at 1259.229 kb on - strand, within Dshi_1218at 1259.275 kb on + strand, within Dshi_1218at 1259.418 kb on - strand, within Dshi_1218at 1259.490 kb on + strand, within Dshi_1218at 1259.498 kb on - strand, within Dshi_1218at 1259.625 kb on + strand, within Dshi_1218at 1259.834 kb on + strand, within Dshi_1218at 1259.900 kb on + strand, within Dshi_1218at 1259.925 kb on + strandat 1259.981 kb on + strandat 1260.010 kb on + strandat 1260.026 kb on + strandat 1260.050 kb on + strandat 1260.122 kb on - strand, within Dshi_1219at 1260.196 kb on + strand, within Dshi_1219at 1260.264 kb on - strand, within Dshi_1219at 1260.298 kb on + strand, within Dshi_1219at 1260.371 kb on - strand, within Dshi_1219at 1260.482 kb on - strand, within Dshi_1219at 1260.528 kb on - strandat 1260.554 kb on + strandat 1260.690 kb on + strandat 1260.730 kb on - strandat 1260.747 kb on + strand, within Dshi_1220at 1261.062 kb on + strand, within Dshi_1220at 1261.194 kb on - strand, within Dshi_1220at 1261.214 kb on + strand, within Dshi_1220at 1261.235 kb on - strand, within Dshi_1220at 1261.297 kb on + strand, within Dshi_1220at 1261.307 kb on + strand, within Dshi_1220at 1261.326 kb on - strand, within Dshi_1220at 1261.522 kb on + strand, within Dshi_1220

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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1,259,211 + Dshi_1218 0.44 -2.7
1,259,229 - Dshi_1218 0.45 +0.7
1,259,275 + Dshi_1218 0.48 +2.2
1,259,418 - Dshi_1218 0.58 -1.9
1,259,490 + Dshi_1218 0.63 -0.8
1,259,498 - Dshi_1218 0.63 +0.7
1,259,625 + Dshi_1218 0.72 -1.7
1,259,834 + Dshi_1218 0.85 +0.1
1,259,900 + Dshi_1218 0.90 +1.5
1,259,925 + -0.1
1,259,981 + +0.0
1,260,010 + -1.5
1,260,026 + +1.5
1,260,050 + -0.9
1,260,122 - Dshi_1219 0.11 +2.5
1,260,196 + Dshi_1219 0.26 +0.2
1,260,264 - Dshi_1219 0.40 +0.7
1,260,298 + Dshi_1219 0.47 -3.7
1,260,371 - Dshi_1219 0.62 +0.8
1,260,482 - Dshi_1219 0.85 +1.7
1,260,528 - -1.2
1,260,554 + -1.4
1,260,690 + -0.1
1,260,730 - -1.3
1,260,747 + Dshi_1220 0.11 -0.8
1,261,062 + Dshi_1220 0.43 +3.5
1,261,194 - Dshi_1220 0.56 -1.9
1,261,214 + Dshi_1220 0.58 -0.8
1,261,235 - Dshi_1220 0.61 -0.7
1,261,297 + Dshi_1220 0.67 +0.7
1,261,307 + Dshi_1220 0.68 -0.0
1,261,326 - Dshi_1220 0.70 -1.1
1,261,522 + Dshi_1220 0.90 +1.4

Or see this region's nucleotide sequence