Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1166

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1165 and Dshi_1166 are separated by 97 nucleotidesDshi_1166 and Dshi_1167 overlap by 4 nucleotides Dshi_1165: Dshi_1165 - Pyrrolo-quinoline quinone (RefSeq), at 1,193,808 to 1,195,160 _1165 Dshi_1166: Dshi_1166 - small GTP-binding protein (RefSeq), at 1,195,258 to 1,196,730 _1166 Dshi_1167: Dshi_1167 - peptidase M48 Ste24p (RefSeq), at 1,196,727 to 1,198,073 _1167 Position (kb) 1195 1196 1197Strain fitness (log2 ratio) -1 0 1 2at 1196.745 kb on - strandat 1196.778 kb on + strandat 1196.929 kb on - strand, within Dshi_1167at 1197.373 kb on - strand, within Dshi_1167at 1197.407 kb on - strand, within Dshi_1167at 1197.690 kb on - strand, within Dshi_1167

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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1,196,745 - +1.3
1,196,778 + +0.1
1,196,929 - Dshi_1167 0.15 -0.3
1,197,373 - Dshi_1167 0.48 +0.7
1,197,407 - Dshi_1167 0.50 -0.6
1,197,690 - Dshi_1167 0.71 +2.3

Or see this region's nucleotide sequence