Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1129

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1127 and Dshi_1128 are separated by 196 nucleotidesDshi_1128 and Dshi_1129 are separated by 4 nucleotidesDshi_1129 and Dshi_1130 are separated by 193 nucleotides Dshi_1127: Dshi_1127 - response regulator receiver protein (RefSeq), at 1,152,923 to 1,154,230 _1127 Dshi_1128: Dshi_1128 - OmpA/MotB domain protein (RefSeq), at 1,154,427 to 1,155,065 _1128 Dshi_1129: Dshi_1129 - type II and III secretion system protein (RefSeq), at 1,155,070 to 1,156,494 _1129 Dshi_1130: Dshi_1130 - SAF domain protein (RefSeq), at 1,156,688 to 1,157,530 _1130 Position (kb) 1155 1156 1157Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1154.169 kb on - strandat 1154.174 kb on - strandat 1154.216 kb on + strandat 1154.231 kb on + strandat 1154.238 kb on + strandat 1154.238 kb on + strandat 1154.246 kb on - strandat 1154.261 kb on + strandat 1154.261 kb on + strandat 1154.297 kb on - strandat 1154.311 kb on - strandat 1154.337 kb on + strandat 1154.340 kb on - strandat 1154.399 kb on + strandat 1154.407 kb on - strandat 1154.422 kb on + strandat 1154.701 kb on + strand, within Dshi_1128at 1154.746 kb on + strand, within Dshi_1128at 1154.811 kb on + strand, within Dshi_1128at 1154.835 kb on + strand, within Dshi_1128at 1154.836 kb on - strand, within Dshi_1128at 1154.981 kb on - strand, within Dshi_1128at 1154.983 kb on - strand, within Dshi_1128at 1155.039 kb on + strandat 1155.327 kb on + strand, within Dshi_1129at 1155.417 kb on + strand, within Dshi_1129at 1155.427 kb on + strand, within Dshi_1129at 1155.435 kb on - strand, within Dshi_1129at 1155.567 kb on + strand, within Dshi_1129at 1155.606 kb on - strand, within Dshi_1129at 1155.689 kb on - strand, within Dshi_1129at 1155.727 kb on + strand, within Dshi_1129at 1155.740 kb on - strand, within Dshi_1129at 1155.847 kb on - strand, within Dshi_1129at 1155.851 kb on - strand, within Dshi_1129at 1155.867 kb on - strand, within Dshi_1129at 1156.135 kb on - strand, within Dshi_1129at 1156.196 kb on - strand, within Dshi_1129at 1156.201 kb on - strand, within Dshi_1129at 1156.262 kb on - strand, within Dshi_1129at 1156.286 kb on - strand, within Dshi_1129at 1156.403 kb on + strandat 1156.425 kb on + strandat 1156.482 kb on - strandat 1156.490 kb on - strandat 1156.531 kb on + strandat 1156.590 kb on + strandat 1156.590 kb on + strandat 1156.672 kb on + strandat 1156.703 kb on - strandat 1156.720 kb on + strandat 1156.720 kb on + strandat 1156.720 kb on + strandat 1156.728 kb on - strandat 1156.728 kb on - strandat 1156.755 kb on + strandat 1156.755 kb on + strandat 1156.755 kb on + strandat 1156.755 kb on + strandat 1156.757 kb on + strandat 1156.763 kb on - strandat 1156.763 kb on - strandat 1156.862 kb on - strand, within Dshi_1130at 1157.153 kb on + strand, within Dshi_1130at 1157.271 kb on + strand, within Dshi_1130at 1157.271 kb on + strand, within Dshi_1130at 1157.277 kb on + strand, within Dshi_1130at 1157.297 kb on - strand, within Dshi_1130at 1157.329 kb on + strand, within Dshi_1130at 1157.376 kb on + strand, within Dshi_1130at 1157.389 kb on - strand, within Dshi_1130at 1157.400 kb on - strand, within Dshi_1130at 1157.422 kb on - strand, within Dshi_1130at 1157.426 kb on + strand, within Dshi_1130at 1157.444 kb on - strand, within Dshi_1130at 1157.481 kb on - strandat 1157.488 kb on + strandat 1157.491 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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1,154,169 - +1.7
1,154,174 - -1.3
1,154,216 + -2.8
1,154,231 + -0.6
1,154,238 + -1.8
1,154,238 + +1.9
1,154,246 - -0.6
1,154,261 + -1.9
1,154,261 + -0.1
1,154,297 - -0.5
1,154,311 - +0.8
1,154,337 + -2.5
1,154,340 - +0.6
1,154,399 + -1.0
1,154,407 - +1.0
1,154,422 + -0.8
1,154,701 + Dshi_1128 0.43 +0.8
1,154,746 + Dshi_1128 0.50 -0.6
1,154,811 + Dshi_1128 0.60 -0.6
1,154,835 + Dshi_1128 0.64 -1.3
1,154,836 - Dshi_1128 0.64 -2.2
1,154,981 - Dshi_1128 0.87 -1.2
1,154,983 - Dshi_1128 0.87 -0.4
1,155,039 + -0.3
1,155,327 + Dshi_1129 0.18 +1.6
1,155,417 + Dshi_1129 0.24 -3.9
1,155,427 + Dshi_1129 0.25 +0.9
1,155,435 - Dshi_1129 0.26 +0.5
1,155,567 + Dshi_1129 0.35 -2.3
1,155,606 - Dshi_1129 0.38 -4.7
1,155,689 - Dshi_1129 0.43 +1.0
1,155,727 + Dshi_1129 0.46 +1.1
1,155,740 - Dshi_1129 0.47 +0.6
1,155,847 - Dshi_1129 0.55 -0.9
1,155,851 - Dshi_1129 0.55 -1.8
1,155,867 - Dshi_1129 0.56 +0.3
1,156,135 - Dshi_1129 0.75 +0.5
1,156,196 - Dshi_1129 0.79 +0.9
1,156,201 - Dshi_1129 0.79 -0.3
1,156,262 - Dshi_1129 0.84 +1.0
1,156,286 - Dshi_1129 0.85 +0.6
1,156,403 + -2.2
1,156,425 + -1.7
1,156,482 - +0.4
1,156,490 - +1.4
1,156,531 + -0.0
1,156,590 + +1.0
1,156,590 + -2.5
1,156,672 + +0.1
1,156,703 - +1.9
1,156,720 + -2.1
1,156,720 + -1.2
1,156,720 + -2.2
1,156,728 - -2.8
1,156,728 - -2.5
1,156,755 + -0.3
1,156,755 + -0.3
1,156,755 + +0.5
1,156,755 + -3.2
1,156,757 + -0.9
1,156,763 - -0.5
1,156,763 - +0.4
1,156,862 - Dshi_1130 0.21 -0.2
1,157,153 + Dshi_1130 0.55 -1.0
1,157,271 + Dshi_1130 0.69 +0.4
1,157,271 + Dshi_1130 0.69 -1.5
1,157,277 + Dshi_1130 0.70 -0.0
1,157,297 - Dshi_1130 0.72 -0.6
1,157,329 + Dshi_1130 0.76 +1.5
1,157,376 + Dshi_1130 0.82 -1.6
1,157,389 - Dshi_1130 0.83 +0.6
1,157,400 - Dshi_1130 0.84 -2.3
1,157,422 - Dshi_1130 0.87 -0.2
1,157,426 + Dshi_1130 0.88 +1.3
1,157,444 - Dshi_1130 0.90 +1.2
1,157,481 - +3.0
1,157,488 + +2.2
1,157,491 - -0.6

Or see this region's nucleotide sequence