Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1127

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1126 and Dshi_1127 are separated by 19 nucleotidesDshi_1127 and Dshi_1128 are separated by 196 nucleotidesDshi_1128 and Dshi_1129 are separated by 4 nucleotides Dshi_1126: Dshi_1126 - type II secretion system protein E (RefSeq), at 1,151,449 to 1,152,903 _1126 Dshi_1127: Dshi_1127 - response regulator receiver protein (RefSeq), at 1,152,923 to 1,154,230 _1127 Dshi_1128: Dshi_1128 - OmpA/MotB domain protein (RefSeq), at 1,154,427 to 1,155,065 _1128 Dshi_1129: Dshi_1129 - type II and III secretion system protein (RefSeq), at 1,155,070 to 1,156,494 _1129 Position (kb) 1152 1153 1154 1155Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1152.035 kb on - strand, within Dshi_1126at 1152.094 kb on + strand, within Dshi_1126at 1152.111 kb on - strand, within Dshi_1126at 1152.185 kb on + strand, within Dshi_1126at 1152.203 kb on - strand, within Dshi_1126at 1152.319 kb on - strand, within Dshi_1126at 1152.467 kb on - strand, within Dshi_1126at 1152.504 kb on + strand, within Dshi_1126at 1152.512 kb on - strand, within Dshi_1126at 1152.512 kb on - strand, within Dshi_1126at 1152.657 kb on + strand, within Dshi_1126at 1152.687 kb on + strand, within Dshi_1126at 1152.701 kb on - strand, within Dshi_1126at 1152.716 kb on - strand, within Dshi_1126at 1152.868 kb on - strandat 1152.914 kb on + strandat 1152.922 kb on - strandat 1153.027 kb on - strandat 1153.108 kb on - strand, within Dshi_1127at 1153.291 kb on - strand, within Dshi_1127at 1153.296 kb on - strand, within Dshi_1127at 1153.317 kb on - strand, within Dshi_1127at 1153.380 kb on + strand, within Dshi_1127at 1153.424 kb on + strand, within Dshi_1127at 1153.495 kb on - strand, within Dshi_1127at 1153.505 kb on - strand, within Dshi_1127at 1153.515 kb on - strand, within Dshi_1127at 1153.522 kb on - strand, within Dshi_1127at 1153.542 kb on - strand, within Dshi_1127at 1153.552 kb on - strand, within Dshi_1127at 1153.577 kb on + strand, within Dshi_1127at 1153.585 kb on - strand, within Dshi_1127at 1153.659 kb on - strand, within Dshi_1127at 1153.754 kb on - strand, within Dshi_1127at 1153.838 kb on + strand, within Dshi_1127at 1153.868 kb on - strand, within Dshi_1127at 1153.887 kb on - strand, within Dshi_1127at 1153.936 kb on - strand, within Dshi_1127at 1154.019 kb on + strand, within Dshi_1127at 1154.027 kb on - strand, within Dshi_1127at 1154.027 kb on - strand, within Dshi_1127at 1154.027 kb on - strand, within Dshi_1127at 1154.169 kb on - strandat 1154.174 kb on - strandat 1154.216 kb on + strandat 1154.231 kb on + strandat 1154.238 kb on + strandat 1154.238 kb on + strandat 1154.246 kb on - strandat 1154.261 kb on + strandat 1154.261 kb on + strandat 1154.297 kb on - strandat 1154.311 kb on - strandat 1154.337 kb on + strandat 1154.340 kb on - strandat 1154.399 kb on + strandat 1154.407 kb on - strandat 1154.422 kb on + strandat 1154.701 kb on + strand, within Dshi_1128at 1154.746 kb on + strand, within Dshi_1128at 1154.811 kb on + strand, within Dshi_1128at 1154.835 kb on + strand, within Dshi_1128at 1154.836 kb on - strand, within Dshi_1128at 1154.981 kb on - strand, within Dshi_1128at 1154.983 kb on - strand, within Dshi_1128at 1155.039 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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1,152,035 - Dshi_1126 0.40 +1.2
1,152,094 + Dshi_1126 0.44 -1.8
1,152,111 - Dshi_1126 0.45 -0.3
1,152,185 + Dshi_1126 0.51 +0.6
1,152,203 - Dshi_1126 0.52 -1.9
1,152,319 - Dshi_1126 0.60 -0.2
1,152,467 - Dshi_1126 0.70 -3.0
1,152,504 + Dshi_1126 0.73 +1.6
1,152,512 - Dshi_1126 0.73 +1.7
1,152,512 - Dshi_1126 0.73 -1.4
1,152,657 + Dshi_1126 0.83 +0.0
1,152,687 + Dshi_1126 0.85 +2.2
1,152,701 - Dshi_1126 0.86 -2.9
1,152,716 - Dshi_1126 0.87 -0.7
1,152,868 - +0.5
1,152,914 + -0.7
1,152,922 - -0.0
1,153,027 - +0.6
1,153,108 - Dshi_1127 0.14 +1.0
1,153,291 - Dshi_1127 0.28 +0.7
1,153,296 - Dshi_1127 0.29 +1.2
1,153,317 - Dshi_1127 0.30 -1.9
1,153,380 + Dshi_1127 0.35 -1.5
1,153,424 + Dshi_1127 0.38 +0.6
1,153,495 - Dshi_1127 0.44 -2.5
1,153,505 - Dshi_1127 0.44 -1.1
1,153,515 - Dshi_1127 0.45 +0.5
1,153,522 - Dshi_1127 0.46 +1.8
1,153,542 - Dshi_1127 0.47 +0.1
1,153,552 - Dshi_1127 0.48 +0.3
1,153,577 + Dshi_1127 0.50 +0.4
1,153,585 - Dshi_1127 0.51 -0.4
1,153,659 - Dshi_1127 0.56 -0.5
1,153,754 - Dshi_1127 0.64 -0.2
1,153,838 + Dshi_1127 0.70 -0.5
1,153,868 - Dshi_1127 0.72 -1.9
1,153,887 - Dshi_1127 0.74 +1.4
1,153,936 - Dshi_1127 0.77 +0.5
1,154,019 + Dshi_1127 0.84 -2.5
1,154,027 - Dshi_1127 0.84 +0.5
1,154,027 - Dshi_1127 0.84 +1.0
1,154,027 - Dshi_1127 0.84 +1.1
1,154,169 - +1.7
1,154,174 - -1.3
1,154,216 + -2.8
1,154,231 + -0.6
1,154,238 + -1.8
1,154,238 + +1.9
1,154,246 - -0.6
1,154,261 + -1.9
1,154,261 + -0.1
1,154,297 - -0.5
1,154,311 - +0.8
1,154,337 + -2.5
1,154,340 - +0.6
1,154,399 + -1.0
1,154,407 - +1.0
1,154,422 + -0.8
1,154,701 + Dshi_1128 0.43 +0.8
1,154,746 + Dshi_1128 0.50 -0.6
1,154,811 + Dshi_1128 0.60 -0.6
1,154,835 + Dshi_1128 0.64 -1.3
1,154,836 - Dshi_1128 0.64 -2.2
1,154,981 - Dshi_1128 0.87 -1.2
1,154,983 - Dshi_1128 0.87 -0.4
1,155,039 + -0.3

Or see this region's nucleotide sequence