Experiment: m.b. Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1124 and Dshi_1125 are separated by 4 nucleotides Dshi_1125 and Dshi_1126 are separated by 2 nucleotides
Dshi_1124: Dshi_1124 - type II secretion system protein (RefSeq), at 1,149,478 to 1,150,473
_1124
Dshi_1125: Dshi_1125 - type II secretion system protein (RefSeq), at 1,150,478 to 1,151,446
_1125
Dshi_1126: Dshi_1126 - type II secretion system protein E (RefSeq), at 1,151,449 to 1,152,903
_1126
Position (kb)
1150
1151
1152 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1149.645 kb on + strand, within Dshi_1124 at 1149.658 kb on - strand, within Dshi_1124 at 1149.767 kb on + strand, within Dshi_1124 at 1149.777 kb on - strand, within Dshi_1124 at 1149.825 kb on + strand, within Dshi_1124 at 1149.825 kb on + strand, within Dshi_1124 at 1149.825 kb on + strand, within Dshi_1124 at 1149.833 kb on - strand, within Dshi_1124 at 1149.873 kb on + strand, within Dshi_1124 at 1149.882 kb on - strand, within Dshi_1124 at 1149.896 kb on + strand, within Dshi_1124 at 1149.920 kb on - strand, within Dshi_1124 at 1150.073 kb on + strand, within Dshi_1124 at 1150.212 kb on - strand, within Dshi_1124 at 1150.282 kb on - strand, within Dshi_1124 at 1150.440 kb on + strand at 1150.448 kb on + strand at 1150.483 kb on - strand at 1150.582 kb on - strand, within Dshi_1125 at 1150.587 kb on + strand, within Dshi_1125 at 1150.608 kb on - strand, within Dshi_1125 at 1150.651 kb on + strand, within Dshi_1125 at 1150.713 kb on + strand, within Dshi_1125 at 1150.740 kb on - strand, within Dshi_1125 at 1150.925 kb on + strand, within Dshi_1125 at 1150.978 kb on + strand, within Dshi_1125 at 1150.978 kb on + strand, within Dshi_1125 at 1151.053 kb on - strand, within Dshi_1125 at 1151.053 kb on - strand, within Dshi_1125 at 1151.053 kb on - strand, within Dshi_1125 at 1151.100 kb on - strand, within Dshi_1125 at 1151.102 kb on + strand, within Dshi_1125 at 1151.102 kb on + strand, within Dshi_1125 at 1151.139 kb on + strand, within Dshi_1125 at 1151.162 kb on + strand, within Dshi_1125 at 1151.203 kb on - strand, within Dshi_1125 at 1151.236 kb on - strand, within Dshi_1125 at 1151.241 kb on - strand, within Dshi_1125 at 1151.242 kb on - strand, within Dshi_1125 at 1151.252 kb on - strand, within Dshi_1125 at 1151.256 kb on + strand, within Dshi_1125 at 1151.301 kb on - strand, within Dshi_1125 at 1151.371 kb on + strand at 1151.371 kb on + strand at 1151.379 kb on - strand at 1151.463 kb on + strand at 1151.508 kb on + strand at 1151.516 kb on - strand at 1151.516 kb on - strand at 1151.542 kb on + strand at 1151.557 kb on - strand at 1151.678 kb on + strand, within Dshi_1126 at 1151.817 kb on - strand, within Dshi_1126 at 1151.865 kb on + strand, within Dshi_1126 at 1151.873 kb on - strand, within Dshi_1126 at 1152.035 kb on - strand, within Dshi_1126 at 1152.094 kb on + strand, within Dshi_1126 at 1152.111 kb on - strand, within Dshi_1126 at 1152.185 kb on + strand, within Dshi_1126 at 1152.203 kb on - strand, within Dshi_1126 at 1152.319 kb on - strand, within Dshi_1126
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml remove 1,149,645 + Dshi_1124 0.17 -0.0 1,149,658 - Dshi_1124 0.18 +0.5 1,149,767 + Dshi_1124 0.29 -1.1 1,149,777 - Dshi_1124 0.30 +0.6 1,149,825 + Dshi_1124 0.35 +0.0 1,149,825 + Dshi_1124 0.35 -2.2 1,149,825 + Dshi_1124 0.35 -0.4 1,149,833 - Dshi_1124 0.36 +0.2 1,149,873 + Dshi_1124 0.40 +0.4 1,149,882 - Dshi_1124 0.41 +0.6 1,149,896 + Dshi_1124 0.42 +1.9 1,149,920 - Dshi_1124 0.44 +0.3 1,150,073 + Dshi_1124 0.60 -0.0 1,150,212 - Dshi_1124 0.74 -1.1 1,150,282 - Dshi_1124 0.81 -0.8 1,150,440 + -0.2 1,150,448 + -1.5 1,150,483 - -1.2 1,150,582 - Dshi_1125 0.11 -1.1 1,150,587 + Dshi_1125 0.11 +1.2 1,150,608 - Dshi_1125 0.13 +0.3 1,150,651 + Dshi_1125 0.18 +0.6 1,150,713 + Dshi_1125 0.24 +0.6 1,150,740 - Dshi_1125 0.27 +1.1 1,150,925 + Dshi_1125 0.46 +1.8 1,150,978 + Dshi_1125 0.52 +0.2 1,150,978 + Dshi_1125 0.52 +2.4 1,151,053 - Dshi_1125 0.59 +1.4 1,151,053 - Dshi_1125 0.59 +3.3 1,151,053 - Dshi_1125 0.59 -0.3 1,151,100 - Dshi_1125 0.64 -2.8 1,151,102 + Dshi_1125 0.64 +1.1 1,151,102 + Dshi_1125 0.64 +1.5 1,151,139 + Dshi_1125 0.68 -0.6 1,151,162 + Dshi_1125 0.71 -2.1 1,151,203 - Dshi_1125 0.75 +1.5 1,151,236 - Dshi_1125 0.78 -0.5 1,151,241 - Dshi_1125 0.79 -0.2 1,151,242 - Dshi_1125 0.79 +0.6 1,151,252 - Dshi_1125 0.80 -0.5 1,151,256 + Dshi_1125 0.80 -0.1 1,151,301 - Dshi_1125 0.85 -0.4 1,151,371 + -2.1 1,151,371 + -0.9 1,151,379 - +3.8 1,151,463 + -1.4 1,151,508 + +1.9 1,151,516 - +0.8 1,151,516 - +0.3 1,151,542 + -0.0 1,151,557 - +2.4 1,151,678 + Dshi_1126 0.16 -0.2 1,151,817 - Dshi_1126 0.25 +0.3 1,151,865 + Dshi_1126 0.29 +2.5 1,151,873 - Dshi_1126 0.29 -2.4 1,152,035 - Dshi_1126 0.40 +1.2 1,152,094 + Dshi_1126 0.44 -1.8 1,152,111 - Dshi_1126 0.45 -0.3 1,152,185 + Dshi_1126 0.51 +0.6 1,152,203 - Dshi_1126 0.52 -1.9 1,152,319 - Dshi_1126 0.60 -0.2
Or see this region's nucleotide sequence