Experiment: m.b. Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_R0023 and Dshi_0985 are separated by 423 nucleotides Dshi_0985 and Dshi_0986 are separated by 177 nucleotides Dshi_0986 and Dshi_0987 overlap by 4 nucleotides Dshi_0987 and Dshi_0988 are separated by 323 nucleotides
Dshi_R0023: Dshi_R0023 - tRNA-Phe (RefSeq), at 1,005,076 to 1,005,150
_R0023
Dshi_0985: Dshi_0985 - hypothetical protein (RefSeq), at 1,005,574 to 1,005,831
_0985
Dshi_0986: Dshi_0986 - helix-turn-helix domain protein (RefSeq), at 1,006,009 to 1,006,383
_0986
Dshi_0987: Dshi_0987 - hypothetical protein (RefSeq), at 1,006,380 to 1,006,733
_0987
Dshi_0988: Dshi_0988 - integrase family protein (RefSeq), at 1,007,057 to 1,008,169
_0988
Position (kb)
1006
1007 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 1005.318 kb on - strand at 1005.322 kb on + strand at 1005.358 kb on - strand at 1005.574 kb on - strand at 1005.593 kb on - strand at 1005.596 kb on + strand at 1005.695 kb on + strand, within Dshi_0985 at 1005.731 kb on - strand, within Dshi_0985 at 1005.731 kb on - strand, within Dshi_0985 at 1005.743 kb on + strand, within Dshi_0985 at 1005.748 kb on + strand, within Dshi_0985 at 1005.748 kb on + strand, within Dshi_0985 at 1005.808 kb on - strand at 1005.819 kb on + strand at 1005.860 kb on + strand at 1005.916 kb on + strand at 1005.939 kb on + strand at 1005.967 kb on + strand at 1006.002 kb on - strand at 1006.017 kb on + strand at 1006.034 kb on + strand at 1006.040 kb on + strand at 1006.040 kb on + strand at 1006.042 kb on - strand at 1006.144 kb on + strand, within Dshi_0986 at 1006.152 kb on - strand, within Dshi_0986 at 1006.152 kb on - strand, within Dshi_0986 at 1006.168 kb on - strand, within Dshi_0986 at 1006.400 kb on + strand at 1006.549 kb on + strand, within Dshi_0987 at 1006.585 kb on - strand, within Dshi_0987 at 1006.664 kb on - strand, within Dshi_0987 at 1006.723 kb on - strand at 1006.844 kb on + strand at 1006.943 kb on + strand at 1007.004 kb on + strand at 1007.027 kb on + strand at 1007.105 kb on - strand at 1007.184 kb on - strand, within Dshi_0988 at 1007.337 kb on + strand, within Dshi_0988 at 1007.356 kb on - strand, within Dshi_0988
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml remove 1,005,318 - +1.1 1,005,322 + -0.9 1,005,358 - -0.2 1,005,574 - +1.8 1,005,593 - +0.6 1,005,596 + -0.4 1,005,695 + Dshi_0985 0.47 +0.9 1,005,731 - Dshi_0985 0.61 -2.1 1,005,731 - Dshi_0985 0.61 -2.6 1,005,743 + Dshi_0985 0.66 +1.6 1,005,748 + Dshi_0985 0.67 -3.3 1,005,748 + Dshi_0985 0.67 -3.4 1,005,808 - +0.3 1,005,819 + -0.9 1,005,860 + +1.1 1,005,916 + +0.7 1,005,939 + -2.3 1,005,967 + -0.7 1,006,002 - +0.0 1,006,017 + -3.6 1,006,034 + +5.7 1,006,040 + +1.0 1,006,040 + -4.3 1,006,042 - +1.8 1,006,144 + Dshi_0986 0.36 +2.8 1,006,152 - Dshi_0986 0.38 +0.2 1,006,152 - Dshi_0986 0.38 -0.0 1,006,168 - Dshi_0986 0.42 +0.3 1,006,400 + +2.7 1,006,549 + Dshi_0987 0.48 +1.3 1,006,585 - Dshi_0987 0.58 +0.0 1,006,664 - Dshi_0987 0.80 +1.4 1,006,723 - -0.8 1,006,844 + +0.9 1,006,943 + +0.1 1,007,004 + +0.7 1,007,027 + -1.2 1,007,105 - -0.5 1,007,184 - Dshi_0988 0.11 +1.7 1,007,337 + Dshi_0988 0.25 -0.2 1,007,356 - Dshi_0988 0.27 -1.7
Or see this region's nucleotide sequence