Experiment: m.b. Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0873 and Dshi_0874 are separated by 100 nucleotides Dshi_0874 and Dshi_0875 are separated by 27 nucleotides Dshi_0875 and Dshi_0876 are separated by 23 nucleotides Dshi_0876 and Dshi_0877 are separated by 26 nucleotides
Dshi_0873: Dshi_0873 - hypothetical protein (RefSeq), at 890,141 to 890,812
_0873
Dshi_0874: Dshi_0874 - extracellular solute-binding protein, family 5 (RefSeq), at 890,913 to 891,137
_0874
Dshi_0875: Dshi_0875 - transposase IS3/IS911 family protein (RefSeq), at 891,165 to 891,431
_0875
Dshi_0876: Dshi_0876 - Integrase catalytic region (RefSeq), at 891,455 to 892,276
_0876
Dshi_0877: Dshi_0877 - 4-phytase (RefSeq), at 892,303 to 893,685
_0877
Position (kb) 891
892
893 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 890.456 kb on + strand, within Dshi_0873 at 890.459 kb on - strand, within Dshi_0873 at 890.468 kb on - strand, within Dshi_0873 at 890.469 kb on + strand, within Dshi_0873 at 890.469 kb on + strand, within Dshi_0873 at 890.469 kb on + strand, within Dshi_0873 at 890.469 kb on + strand, within Dshi_0873 at 890.469 kb on + strand, within Dshi_0873 at 890.469 kb on + strand, within Dshi_0873 at 890.471 kb on - strand, within Dshi_0873 at 890.477 kb on + strand, within Dshi_0873 at 890.477 kb on - strand, within Dshi_0873 at 890.477 kb on - strand, within Dshi_0873 at 890.483 kb on + strand, within Dshi_0873 at 890.493 kb on + strand, within Dshi_0873 at 890.501 kb on - strand, within Dshi_0873 at 890.502 kb on + strand, within Dshi_0873 at 890.510 kb on - strand, within Dshi_0873 at 890.510 kb on - strand, within Dshi_0873 at 890.510 kb on - strand, within Dshi_0873 at 890.547 kb on + strand, within Dshi_0873 at 890.577 kb on - strand, within Dshi_0873 at 890.580 kb on + strand, within Dshi_0873 at 890.580 kb on + strand, within Dshi_0873 at 890.583 kb on + strand, within Dshi_0873 at 890.583 kb on + strand, within Dshi_0873 at 890.588 kb on + strand, within Dshi_0873 at 890.588 kb on + strand, within Dshi_0873 at 890.588 kb on + strand, within Dshi_0873 at 890.588 kb on + strand, within Dshi_0873 at 890.588 kb on + strand, within Dshi_0873 at 890.588 kb on + strand, within Dshi_0873 at 890.588 kb on + strand, within Dshi_0873 at 890.588 kb on - strand, within Dshi_0873 at 890.593 kb on + strand, within Dshi_0873 at 890.596 kb on - strand, within Dshi_0873 at 890.596 kb on - strand, within Dshi_0873 at 890.596 kb on - strand, within Dshi_0873 at 890.596 kb on - strand, within Dshi_0873 at 890.596 kb on - strand, within Dshi_0873 at 890.596 kb on - strand, within Dshi_0873 at 890.596 kb on - strand, within Dshi_0873 at 890.596 kb on - strand, within Dshi_0873 at 890.596 kb on - strand, within Dshi_0873 at 890.597 kb on + strand, within Dshi_0873 at 890.601 kb on - strand, within Dshi_0873 at 890.601 kb on - strand, within Dshi_0873 at 890.602 kb on + strand, within Dshi_0873 at 890.602 kb on + strand, within Dshi_0873 at 890.605 kb on - strand, within Dshi_0873 at 890.605 kb on - strand, within Dshi_0873 at 890.610 kb on - strand, within Dshi_0873 at 890.610 kb on - strand, within Dshi_0873 at 890.610 kb on - strand, within Dshi_0873 at 890.616 kb on + strand, within Dshi_0873 at 890.624 kb on - strand, within Dshi_0873 at 890.628 kb on + strand, within Dshi_0873 at 890.636 kb on - strand, within Dshi_0873 at 890.647 kb on + strand, within Dshi_0873 at 890.647 kb on + strand, within Dshi_0873 at 890.652 kb on + strand, within Dshi_0873 at 890.652 kb on + strand, within Dshi_0873 at 890.652 kb on + strand, within Dshi_0873 at 890.655 kb on + strand, within Dshi_0873 at 890.657 kb on + strand, within Dshi_0873 at 890.657 kb on + strand, within Dshi_0873 at 890.657 kb on + strand, within Dshi_0873 at 890.657 kb on + strand, within Dshi_0873 at 890.658 kb on - strand, within Dshi_0873 at 890.659 kb on - strand, within Dshi_0873 at 890.665 kb on - strand, within Dshi_0873 at 890.665 kb on - strand, within Dshi_0873 at 890.665 kb on - strand, within Dshi_0873 at 890.683 kb on - strand, within Dshi_0873 at 890.683 kb on - strand, within Dshi_0873 at 890.713 kb on + strand, within Dshi_0873 at 890.723 kb on + strand, within Dshi_0873 at 890.744 kb on - strand, within Dshi_0873 at 890.744 kb on - strand, within Dshi_0873 at 890.768 kb on + strand at 890.768 kb on - strand at 890.813 kb on - strand at 890.816 kb on + strand at 890.816 kb on + strand at 890.816 kb on + strand at 890.816 kb on + strand at 890.824 kb on - strand at 890.824 kb on - strand at 890.824 kb on - strand at 890.825 kb on - strand at 890.826 kb on + strand at 890.826 kb on + strand at 890.826 kb on + strand at 890.826 kb on + strand at 890.834 kb on - strand at 890.834 kb on - strand at 890.834 kb on - strand at 890.834 kb on - strand at 890.834 kb on - strand at 890.835 kb on - strand at 890.841 kb on + strand at 890.945 kb on - strand, within Dshi_0874 at 890.946 kb on - strand at 890.968 kb on - strand, within Dshi_0874 at 890.995 kb on + strand, within Dshi_0874 at 891.003 kb on - strand, within Dshi_0874 at 891.003 kb on - strand, within Dshi_0874 at 891.008 kb on + strand, within Dshi_0874 at 891.010 kb on + strand, within Dshi_0874 at 891.022 kb on - strand, within Dshi_0874 at 891.025 kb on + strand, within Dshi_0874 at 891.031 kb on + strand, within Dshi_0874 at 891.039 kb on - strand, within Dshi_0874 at 891.039 kb on - strand, within Dshi_0874 at 891.042 kb on + strand, within Dshi_0874 at 891.050 kb on - strand, within Dshi_0874 at 891.050 kb on - strand, within Dshi_0874 at 891.050 kb on - strand, within Dshi_0874 at 891.050 kb on - strand, within Dshi_0874 at 891.072 kb on + strand, within Dshi_0874 at 891.072 kb on + strand, within Dshi_0874 at 891.073 kb on + strand, within Dshi_0874 at 891.080 kb on - strand, within Dshi_0874 at 891.081 kb on - strand, within Dshi_0874 at 891.092 kb on + strand, within Dshi_0874 at 891.117 kb on - strand at 891.119 kb on - strand at 892.328 kb on + strand at 892.336 kb on - strand at 892.336 kb on - strand at 892.346 kb on + strand at 892.370 kb on + strand at 892.458 kb on - strand, within Dshi_0877 at 892.465 kb on - strand, within Dshi_0877 at 892.495 kb on - strand, within Dshi_0877 at 892.556 kb on - strand, within Dshi_0877 at 892.587 kb on - strand, within Dshi_0877 at 892.630 kb on - strand, within Dshi_0877 at 892.694 kb on + strand, within Dshi_0877 at 892.694 kb on + strand, within Dshi_0877 at 892.699 kb on + strand, within Dshi_0877 at 892.737 kb on + strand, within Dshi_0877 at 892.762 kb on - strand, within Dshi_0877 at 892.849 kb on + strand, within Dshi_0877 at 892.867 kb on - strand, within Dshi_0877 at 892.881 kb on - strand, within Dshi_0877 at 892.885 kb on + strand, within Dshi_0877 at 892.886 kb on - strand, within Dshi_0877 at 892.891 kb on - strand, within Dshi_0877 at 892.893 kb on + strand, within Dshi_0877 at 892.923 kb on + strand, within Dshi_0877 at 892.991 kb on - strand, within Dshi_0877 at 893.011 kb on + strand, within Dshi_0877 at 893.051 kb on + strand, within Dshi_0877 at 893.069 kb on - strand at 893.249 kb on + strand, within Dshi_0877 at 893.250 kb on - strand, within Dshi_0877
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml remove 890,456 + Dshi_0873 0.47 +0.2 890,459 - Dshi_0873 0.47 -1.1 890,468 - Dshi_0873 0.49 +4.6 890,469 + Dshi_0873 0.49 +1.8 890,469 + Dshi_0873 0.49 +2.0 890,469 + Dshi_0873 0.49 +1.3 890,469 + Dshi_0873 0.49 +4.1 890,469 + Dshi_0873 0.49 -1.0 890,469 + Dshi_0873 0.49 -0.1 890,471 - Dshi_0873 0.49 +1.1 890,477 + Dshi_0873 0.50 -2.2 890,477 - Dshi_0873 0.50 +0.9 890,477 - Dshi_0873 0.50 +1.8 890,483 + Dshi_0873 0.51 -1.9 890,493 + Dshi_0873 0.52 +0.6 890,501 - Dshi_0873 0.54 +1.5 890,502 + Dshi_0873 0.54 +0.2 890,510 - Dshi_0873 0.55 -0.2 890,510 - Dshi_0873 0.55 -2.5 890,510 - Dshi_0873 0.55 -1.1 890,547 + Dshi_0873 0.60 -0.2 890,577 - Dshi_0873 0.65 +0.1 890,580 + Dshi_0873 0.65 +0.8 890,580 + Dshi_0873 0.65 -1.2 890,583 + Dshi_0873 0.66 -1.5 890,583 + Dshi_0873 0.66 -2.5 890,588 + Dshi_0873 0.67 -0.1 890,588 + Dshi_0873 0.67 +0.1 890,588 + Dshi_0873 0.67 +0.3 890,588 + Dshi_0873 0.67 -0.4 890,588 + Dshi_0873 0.67 -0.2 890,588 + Dshi_0873 0.67 -0.5 890,588 + Dshi_0873 0.67 -0.5 890,588 - Dshi_0873 0.67 +0.4 890,593 + Dshi_0873 0.67 -1.9 890,596 - Dshi_0873 0.68 -1.2 890,596 - Dshi_0873 0.68 -0.2 890,596 - Dshi_0873 0.68 -0.0 890,596 - Dshi_0873 0.68 +0.8 890,596 - Dshi_0873 0.68 -0.4 890,596 - Dshi_0873 0.68 +3.1 890,596 - Dshi_0873 0.68 -1.5 890,596 - Dshi_0873 0.68 -1.0 890,596 - Dshi_0873 0.68 -0.2 890,597 + Dshi_0873 0.68 +0.8 890,601 - Dshi_0873 0.68 -1.2 890,601 - Dshi_0873 0.68 +1.8 890,602 + Dshi_0873 0.69 +3.8 890,602 + Dshi_0873 0.69 -1.5 890,605 - Dshi_0873 0.69 +2.4 890,605 - Dshi_0873 0.69 +1.6 890,610 - Dshi_0873 0.70 +1.0 890,610 - Dshi_0873 0.70 -0.7 890,610 - Dshi_0873 0.70 +0.0 890,616 + Dshi_0873 0.71 +2.7 890,624 - Dshi_0873 0.72 +2.5 890,628 + Dshi_0873 0.72 -0.8 890,636 - Dshi_0873 0.74 -0.8 890,647 + Dshi_0873 0.75 +0.5 890,647 + Dshi_0873 0.75 -1.0 890,652 + Dshi_0873 0.76 -1.2 890,652 + Dshi_0873 0.76 -1.3 890,652 + Dshi_0873 0.76 -1.3 890,655 + Dshi_0873 0.76 +0.1 890,657 + Dshi_0873 0.77 +1.4 890,657 + Dshi_0873 0.77 +0.8 890,657 + Dshi_0873 0.77 -0.9 890,657 + Dshi_0873 0.77 +1.7 890,658 - Dshi_0873 0.77 -0.5 890,659 - Dshi_0873 0.77 -2.9 890,665 - Dshi_0873 0.78 +0.2 890,665 - Dshi_0873 0.78 -0.3 890,665 - Dshi_0873 0.78 -1.1 890,683 - Dshi_0873 0.81 -2.2 890,683 - Dshi_0873 0.81 -0.9 890,713 + Dshi_0873 0.85 -1.0 890,723 + Dshi_0873 0.87 +1.0 890,744 - Dshi_0873 0.90 -3.2 890,744 - Dshi_0873 0.90 +2.0 890,768 + -0.0 890,768 - -2.9 890,813 - -1.5 890,816 + +1.2 890,816 + -0.6 890,816 + +1.8 890,816 + +0.4 890,824 - +0.8 890,824 - -1.2 890,824 - +2.4 890,825 - +0.8 890,826 + -3.9 890,826 + -0.8 890,826 + -0.0 890,826 + -1.0 890,834 - +1.0 890,834 - +1.1 890,834 - -0.2 890,834 - +0.4 890,834 - -0.3 890,835 - -1.8 890,841 + -4.0 890,945 - Dshi_0874 0.14 -1.8 890,946 - -0.8 890,968 - Dshi_0874 0.24 -0.1 890,995 + Dshi_0874 0.36 +0.3 891,003 - Dshi_0874 0.40 +0.5 891,003 - Dshi_0874 0.40 +1.5 891,008 + Dshi_0874 0.42 +0.3 891,010 + Dshi_0874 0.43 -0.8 891,022 - Dshi_0874 0.48 +0.4 891,025 + Dshi_0874 0.50 +2.2 891,031 + Dshi_0874 0.52 +0.1 891,039 - Dshi_0874 0.56 +1.0 891,039 - Dshi_0874 0.56 +1.1 891,042 + Dshi_0874 0.57 +0.8 891,050 - Dshi_0874 0.61 -0.5 891,050 - Dshi_0874 0.61 +2.6 891,050 - Dshi_0874 0.61 -0.9 891,050 - Dshi_0874 0.61 +2.0 891,072 + Dshi_0874 0.71 +0.4 891,072 + Dshi_0874 0.71 +1.6 891,073 + Dshi_0874 0.71 -2.5 891,080 - Dshi_0874 0.74 -1.5 891,081 - Dshi_0874 0.75 -0.8 891,092 + Dshi_0874 0.80 +0.2 891,117 - -1.5 891,119 - +0.3 892,328 + -0.5 892,336 - +2.6 892,336 - +1.0 892,346 + +0.1 892,370 + -2.0 892,458 - Dshi_0877 0.11 -2.4 892,465 - Dshi_0877 0.12 +1.2 892,495 - Dshi_0877 0.14 -0.2 892,556 - Dshi_0877 0.18 -3.3 892,587 - Dshi_0877 0.21 -1.2 892,630 - Dshi_0877 0.24 +1.5 892,694 + Dshi_0877 0.28 -1.2 892,694 + Dshi_0877 0.28 -0.6 892,699 + Dshi_0877 0.29 -1.2 892,737 + Dshi_0877 0.31 +0.0 892,762 - Dshi_0877 0.33 -0.2 892,849 + Dshi_0877 0.39 -1.9 892,867 - Dshi_0877 0.41 +0.5 892,881 - Dshi_0877 0.42 -1.8 892,885 + Dshi_0877 0.42 +3.1 892,886 - Dshi_0877 0.42 -0.6 892,891 - Dshi_0877 0.43 -0.5 892,893 + Dshi_0877 0.43 +0.8 892,923 + Dshi_0877 0.45 -0.0 892,991 - Dshi_0877 0.50 +1.1 893,011 + Dshi_0877 0.51 +1.0 893,051 + Dshi_0877 0.54 -0.2 893,069 - -0.8 893,249 + Dshi_0877 0.68 -1.7 893,250 - Dshi_0877 0.68 +0.7
Or see this region's nucleotide sequence