Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0853

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0852 and Dshi_0853 are separated by 212 nucleotidesDshi_0853 and Dshi_0854 are separated by 84 nucleotidesDshi_0854 and Dshi_0855 are separated by 29 nucleotides Dshi_0852: Dshi_0852 - lipid A ABC exporter family, fused ATPase and inner membrane subunits (RefSeq), at 863,045 to 864,853 _0852 Dshi_0853: Dshi_0853 - AMP-dependent synthetase and ligase (RefSeq), at 865,066 to 866,964 _0853 Dshi_0854: Dshi_0854 - hypothetical protein (RefSeq), at 867,049 to 867,252 _0854 Dshi_0855: Dshi_0855 - transglutaminase domain protein (RefSeq), at 867,282 to 868,169 _0855 Position (kb) 865 866 867Strain fitness (log2 ratio) -2 -1 0 1 2at 864.668 kb on + strand, within Dshi_0852at 864.904 kb on - strandat 865.037 kb on + strandat 865.104 kb on + strandat 865.222 kb on + strandat 865.266 kb on + strand, within Dshi_0853at 865.368 kb on - strand, within Dshi_0853at 865.368 kb on - strand, within Dshi_0853at 865.540 kb on + strand, within Dshi_0853at 865.542 kb on + strand, within Dshi_0853at 865.554 kb on + strand, within Dshi_0853at 865.567 kb on - strand, within Dshi_0853at 865.784 kb on - strand, within Dshi_0853at 865.814 kb on + strand, within Dshi_0853at 865.817 kb on - strand, within Dshi_0853at 865.848 kb on + strand, within Dshi_0853at 865.976 kb on + strand, within Dshi_0853at 866.245 kb on + strand, within Dshi_0853at 866.245 kb on + strand, within Dshi_0853at 866.270 kb on - strand, within Dshi_0853at 866.478 kb on + strand, within Dshi_0853at 866.691 kb on + strand, within Dshi_0853at 866.692 kb on + strand, within Dshi_0853at 866.749 kb on + strand, within Dshi_0853at 866.762 kb on + strand, within Dshi_0853at 866.933 kb on + strandat 867.029 kb on - strandat 867.073 kb on + strand, within Dshi_0854at 867.105 kb on + strand, within Dshi_0854at 867.209 kb on + strand, within Dshi_0854at 867.250 kb on - strandat 867.322 kb on + strandat 867.350 kb on - strandat 867.455 kb on + strand, within Dshi_0855at 867.715 kb on - strand, within Dshi_0855

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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864,668 + Dshi_0852 0.90 +1.3
864,904 - +2.3
865,037 + -0.8
865,104 + +1.5
865,222 + -1.4
865,266 + Dshi_0853 0.11 -0.4
865,368 - Dshi_0853 0.16 +2.4
865,368 - Dshi_0853 0.16 -0.3
865,540 + Dshi_0853 0.25 +0.5
865,542 + Dshi_0853 0.25 -0.4
865,554 + Dshi_0853 0.26 -1.4
865,567 - Dshi_0853 0.26 +2.0
865,784 - Dshi_0853 0.38 -0.2
865,814 + Dshi_0853 0.39 -1.5
865,817 - Dshi_0853 0.40 +0.4
865,848 + Dshi_0853 0.41 -1.9
865,976 + Dshi_0853 0.48 -0.4
866,245 + Dshi_0853 0.62 -0.5
866,245 + Dshi_0853 0.62 +0.1
866,270 - Dshi_0853 0.63 -0.4
866,478 + Dshi_0853 0.74 -1.6
866,691 + Dshi_0853 0.86 +0.5
866,692 + Dshi_0853 0.86 -0.1
866,749 + Dshi_0853 0.89 -1.5
866,762 + Dshi_0853 0.89 -0.7
866,933 + -0.9
867,029 - +2.3
867,073 + Dshi_0854 0.12 +0.8
867,105 + Dshi_0854 0.27 -0.5
867,209 + Dshi_0854 0.78 +0.2
867,250 - -0.8
867,322 + -0.8
867,350 - -1.7
867,455 + Dshi_0855 0.19 +0.5
867,715 - Dshi_0855 0.49 -0.7

Or see this region's nucleotide sequence